YRC Public Data Repository - Protein Structure Prediction

Protein:	YCFR_ECOLI
Organism:	Escherichia coli
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCFR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|62127367, gi\|... - gi\|62179734\|ref\|YP_216151.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se...	105.0	[0..1]	[85..23]
gi\|56413801, gi\|... - gi\|56413801\|ref\|YP_150876.1\| putative secreted protein [Salmonella enterica subsp. enterica serovar ... gi\|238910966 - gi\|238910966\|ref\|ZP_04654803.1\| putative secreted protein [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=ycfR] [protein=putative outer membrane protein] [protein_id=YP_005236971.1] [location=1255591.... gi\|16419732, gi\|... - gi\|16764569\|ref\|NP_460184.1\| putative outer membrane protein [Salmonella typhimurium LT2], gi\|164197... gi\|197362724, gi... - gi\|197362724\|ref\|YP_002142361.1\| putative secreted protein [Salmonella enterica subsp. enterica sero... gi\|197251779, gi... - gi\|197251779\|ref\|YP_002146828.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Agona str... gi\|197261893, gi... - gi\|197261893\|ref\|ZP_03161967.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|194451251, gi... - gi\|194451251\|ref\|YP_002045213.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Heidelber... gi\|194471936, gi... - gi\|194471936\|ref\|ZP_03077920.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|205341230, gi... - gi\|205341230\|gb\|EDZ27994.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|194444614, gi... - gi\|194444614\|ref\|YP_002040468.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Newport s... gi\|205332602, gi... - gi\|205332602\|gb\|EDZ19366.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|168244285, gi... - gi\|205336788\|gb\|EDZ23552.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|167992002, gi... - gi\|205329803\|gb\|EDZ16567.1\| protein YcfR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s...	102.0	[0..1]	[85..1]
gi\|213857815 - gi\|213857815\|ref\|ZP_03384786.1\| putative outer membrane protein [Salmonella enterica subsp. enterica... gi\|213981409 - gi\|213981409\|ref\|ZP_03408668.1\| putative outer membrane protein [Salmonella enterica subsp. enterica... gi\|214003112 - gi\|214003112\|ref\|ZP_03413847.1\| putative outer membrane protein [Salmonella enterica subsp. enterica... gi\|224468807, gi... - gi\|224584280\|ref\|YP_002638078.1\| putative secreted protein [Salmonella enterica subsp. enterica sero... gi\|213425037 - gi\|213425037\|ref\|ZP_03357787.1\| putative outer membrane protein [Salmonella enterica subsp. enterica... gi\|213583974 - gi\|213583974\|ref\|ZP_03365800.1\| putative outer membrane protein [Salmonella enterica subsp. enterica... gi\|213616031 - gi\|213616031\|ref\|ZP_03371857.1\| putative outer membrane protein [Salmonella enterica subsp. enterica... gi\|213649269 - gi\|213649269\|ref\|ZP_03379322.1\| putative outer membrane protein [Salmonella enterica subsp. enterica... gi\|197937628, gi... - gi\|198243112\|ref\|YP_002215924.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Dublin st... gi\|205272833, gi... - gi\|205353052\|ref\|YP_002226853.1\| putative secreted protein [Salmonella enterica subsp. enterica sero... gi\|206709082, gi... - gi\|207857279\|ref\|YP_002243930.1\| putative secreted protein [Salmonella enterica subsp. enterica sero... gi\|213024119 - gi\|213024119\|ref\|ZP_03338566.1\| putative outer membrane protein [Salmonella enterica subsp. enterica... gi\|168264277, gi... - gi\|205347226\|gb\|EDZ33857.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|16760089 - gi\|16760089\|ref\|NP_455706.1\| putative secreted protein [Salmonella enterica subsp. enterica serovar ... gi\|25321955, gi\|... - gi\|25321955\|pir\|\|AG0644 probable secreted protein STY1254 [imported] - Salmonella enterica subsp. en... gi\|29142140, gi\|... - gi\|29142140\|ref\|NP_805482.1\| putative secreted protein [Salmonella enterica subsp. enterica serovar ...	101.0	[0..1]	[85..1]
gi\|91071841, gi\|... - gi\|91210267\|ref\|YP_540253.1\| hypothetical protein UTI89_C1240 [Escherichia coli UTI89], gi\|91071841\|... gi\|110641288, gi... - gi\|110641288\|ref\|YP_669018.1\| hypothetical protein ECP_1104 [Escherichia coli 536], gi\|110342880\|gb\|... gi\|218364762, gi... - gi\|218557993\|ref\|YP_002390906.1\| hypothetical protein ECS88_1126 [Escherichia coli S88], gi\|21836476... gi\|237706902, gi... - gi\|237706902\|ref\|ZP_04537383.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|117623297, gi... - gi\|117623297\|ref\|YP_852210.1\| hypothetical protein APECO1_193 [Escherichia coli APEC O1], gi\|1155124... gi\|218426628, gi... - gi\|218689064\|ref\|YP_002397276.1\| hypothetical protein ECED1_1255 [Escherichia coli ED1a], gi\|2184266... gi\|75239609, gi\|... - gi\|75239609\|ref\|ZP_00723576.1\| COG0474: Cation transport ATPase [Escherichia coli F11], gi\|191173058...	100.0	[0..1]	[85..1]
gi\|73855150, gi\|... - gi\|74311673\|ref\|YP_310092.1\| hypothetical protein SSON_1132 [Shigella sonnei Ss046], gi\|73855150\|gb\|...	100.0	[0..1]	[85..1]
gi\|81245831, gi\|... - gi\|82544420\|ref\|YP_408367.1\| hypothetical protein SBO_1949 [Shigella boydii Sb227], gi\|81245831\|gb\|A...	100.0	[0..1]	[85..1]
Q66F82\|Q66F82_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|166961442, gi... - gi\|167420636\|ref\|ZP_02312389.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167049260, gi... - gi\|167401235\|ref\|ZP_02306735.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167470484 - gi\|167470484\|ref\|ZP_02335188.1\| hypothetical protein YpesF_21987 [Yersinia pestis FV-1] gi\|167423526, gi... - gi\|167423526\|ref\|ZP_02315279.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|25321953 - pir\|\|AG0427 probable exported protein YPO3518 [imported] - Yersinia pestis (strain CO92) gi\|186893819, gi... - gi\|186893819\|ref\|YP_001870931.1\| hypothetical protein YPTS_0488 [Yersinia pseudotuberculosis PB1/+],... gi\|170025978, gi... - gi\|170025978\|ref\|YP_001722483.1\| hypothetical protein YPK_3763 [Yersinia pseudotuberculosis YPIII], ... gi\|45435276, gi\|... - gi\|45440419\|ref\|NP_991958.1\| hypothetical protein YP_0565 [Yersinia pestis biovar Microtus str. 9100... gi\|22124580, gi\|... - gi\|22124580\|ref\|NP_668003.1\| hypothetical protein y0666 [Yersinia pestis KIM], gi\|21957382\|gb\|AAM842... gi\|15981442, gi\|... - gi\|218930532\|ref\|YP_002348407.1\| hypothetical protein YPO3518 [Yersinia pestis CO92], gi\|16123664\|re... gi\|229679667, gi... - gi\|229903897\|ref\|ZP_04519010.1\| putative exported protein [Yersinia pestis Nepal516], gi\|229679667\|g... gi\|51588092, gi\|... - gi\|51594810\|ref\|YP_069001.1\| hypothetical protein YPTB0458 [Yersinia pseudotuberculosis IP 32953], g... gi\|165928179, gi... - gi\|165928179\|ref\|ZP_02224011.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|165937563, gi... - gi\|89104087\|ref\|ZP_01176641.1\| COG0214: Pyridoxine biosynthesis enzyme [Yersinia pestis biovar Orien... gi\|166214029, gi... - gi\|166214029\|ref\|ZP_02240064.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|108777979, gi... - gi\|108806066\|ref\|YP_649982.1\| hypothetical protein YPA_0068 [Yersinia pestis Antiqua], gi\|108777979\|... gi\|166011384, gi... - gi\|166011384\|ref\|ZP_02232282.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229695537, gi... - gi\|229839171\|ref\|ZP_04459330.1\| putative exported protein [Yersinia pestis biovar Orientalis str. PE... gi\|229896660, gi... - gi\|229896660\|ref\|ZP_04511827.1\| putative exported protein [Yersinia pestis Pestoides A], gi\|22970043... gi\|229899735, gi... - gi\|229899735\|ref\|ZP_04514876.1\| putative exported protein [Yersinia pestis biovar Orientalis str. In... gi\|162352278, gi... - gi\|77634760\|ref\|ZP_00796854.1\| COG0214: Pyridoxine biosynthesis enzyme [Yersinia pestis Angola], gi\|... gi\|149288932, gi... - gi\|153997295\|ref\|ZP_02022395.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149288932\|... gi\|145600814, gi... - gi\|145600814\|ref\|YP_001164890.1\| hypothetical protein YPDSF_3567 [Yersinia pestis Pestoides F], gi\|1... gi\|152959945, gi... - gi\|153948450\|ref\|YP_001402572.1\| hypothetical protein YpsIP31758_3618 [Yersinia pseudotuberculosis I...	99.0	[0..1]	[85..1]
gi\|77958770 - gi\|77958770\|ref\|ZP_00822798.1\| COG0214: Pyridoxine biosynthesis enzyme [Yersinia bercovieri ATCC 439...	97.0	[0..1]	[85..1]
gi\|83585391 - gi\|83585391\|ref\|ZP_00924037.1\| hypothetical protein Ecol1_01003369 [Escherichia coli 101-1]	97.0	[0..1]	[85..18]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNVKTLIAA AILSSMSFAS FAAVEVQSTP EGQQKVGTIS ANAGTNLGSL EEQLAQKADE  60
   61 MGAKSFRITS VTGPNTLHGT AVIYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	2nocA
Description:	No description for 2nocA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits