YRC Public Data Repository - Protein Structure Prediction

Protein:	YCFN_ECOLI, THIK...
Organism:	Escherichia coli
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCFN_ECOLI, THIK....

Description	E-value	Query Range	Subject Range
gi\|83569572, gi\|... - gi\|83569572\|ref\|ZP_00921024.1\| COG0510: Predicted choline kinase involved in LPS biosynthesis [Shige...	161.0	[0..1]	[274..1]
gi\|15830738, gi\|... - gi\|15830738\|ref\|NP_309511.1\| thiamine kinase [Escherichia coli O157:H7 str. Sakai], gi\|13360948\|dbj\|... gi\|25333375, gi\|... - pir\|\|H85673 beta-glucosidase (EC 3.2.1.21), probable ycfN [imported] - Escherichia coli (strain O157... gi\|168764898, gi... - gi\|189365182\|gb\|EDU83598.1\| thiamine kinase [Escherichia coli O157:H7 str. EC4501], gi\|168764898\|ref... gi\|168790084, gi... - gi\|189370358\|gb\|EDU88774.1\| thiamine kinase [Escherichia coli O157:H7 str. EC869], gi\|168790084\|ref\|... gi\|12514653, gi\|... - gi\|15801223\|ref\|NP_287240.1\| thiamine kinase [Escherichia coli O157:H7 EDL933], gi\|12514653\|gb\|AAG55... gi\|217318968, gi... - gi\|217328541\|ref\|ZP_03444623.1\| thiamine kinase [Escherichia coli O157:H7 str. TW14588], gi\|21731896... THIK_ECO57 - Thiamine kinase OS=Escherichia coli O157:H7 GN=thiK PE=3 SV=1	161.0	[0..1]	[274..1]
THIK_SHIDS - Thiamine kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=thiK PE=3 SV=1	161.0	[0..1]	[274..1]
gi\|24112511, gi\|... - gi\|24112511\|ref\|NP_707021.1\| thiamine kinase [Shigella flexneri 2a str. 301], gi\|24051401\|gb\|AAN4272... gi\|30040885, gi\|... - gi\|30062639\|ref\|NP_836810.1\| thiamine kinase [Shigella flexneri 2a str. 2457T], gi\|30040885\|gb\|AAP16... THIK_SHIFL - Thiamine kinase OS=Shigella flexneri GN=thiK PE=3 SV=1 THIK_SHIF8 - Thiamine kinase OS=Shigella flexneri serotype 5b (strain 8401) GN=thiK PE=3 SV=1	160.0	[0..1]	[274..1]
THIK_SHIBS - Thiamine kinase OS=Shigella boydii serotype 4 (strain Sb227) GN=thiK PE=3 SV=1	159.0	[0..1]	[274..1]
THIK_ECOLC - Thiamine kinase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=thiK PE=3 SV=1 gi\|124529853, gi... - gi\|124529853\|ref\|ZP_01700697.1\| aminoglycoside phosphotransferase [Escherichia coli B], gi\|124499561... gi\|75511405, gi\|... - gi\|75511405\|ref\|ZP_00734088.1\| COG0510: Predicted choline kinase involved in LPS biosynthesis [Esche... THIK_ECOHS - Thiamine kinase OS=Escherichia coli O9:H4 (strain HS) GN=thiK PE=3 SV=1	159.0	[0..1]	[274..1]
gi\|75175771, gi\|... - gi\|75175771\|ref\|ZP_00695971.1\| COG0510: Predicted choline kinase involved in LPS biosynthesis [Shige...	159.0	[0..1]	[274..1]
gi\|194439740, gi... - gi\|83584873\|ref\|ZP_00923531.1\| COG0510: Predicted choline kinase involved in LPS biosynthesis [Esche... gi\|254288020, gi... - gi\|254288020\|ref\|YP_003053768.1\| thiamin kinase [Escherichia coli BL21(DE3)], gi\|253977327\|gb\|ACT429... gi\|251784636, gi... - gi\|251784636\|ref\|YP_002998940.1\| hypothetical protein B21_01110 [Escherichia coli BL21], gi\|24237690... gi\|253973113, gi... - gi\|254161212\|ref\|YP_003044320.1\| thiamin kinase [Escherichia coli B str. REL606], gi\|253973113\|gb\|AC...	158.0	[0..1]	[274..1]
THIK_ECO45 - Thiamine kinase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=thiK PE=3 SV=1 THIK_ECOUT - Thiamine kinase OS=Escherichia coli (strain UTI89 / UPEC) GN=thiK PE=3 SV=1 THIK_ECOK1 - Thiamine kinase OS=Escherichia coli O1:K1 / APEC GN=thiK PE=3 SV=1 gi\|237706908, gi... - gi\|237706908\|ref\|ZP_04537389.1\| thiamine kinase [Escherichia sp. 3_2_53FAA], gi\|226898118\|gb\|EEH8437...	158.0	[0..1]	[274..1]
THIK_ECOL6 - Thiamine kinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=thiK PE=3 SV=1 gi\|227886537, gi... - gi\|227886537\|ref\|ZP_04004342.1\| thiamine kinase [Escherichia coli 83972], gi\|227836741\|gb\|EEJ47207.1... THIK_ECOL6 - Thiamine kinase OS=Escherichia coli O6 GN=thiK PE=3 SV=1	158.0	[0..1]	[274..1]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFRSNNPIT RDELLSRFFP QYHPVTTFNS GLSGGSFLIE HQGQRFVVRQ PHDPDAPQSA  60
   61 FLRQYRALSQ LPACIAPKPH LYLRDWMVVD YLPGAVKTYL PDTNELAGLL YYLHQQPRFG 120
  121 WRITLLPLLE LYWQQSDPAR RTVGWLRMLK RLRKAREPRP LRLSPLHMDV HAGNLVHSAS 180
  181 GLKLIDWEYA GDGDIALELA AVWVENTEQH RQLVNDYATR AKIYPAQLWR QVRRWFPWLL 240
  241 MLKAGWFEYR WRQTGDQQFI RLADDTWRQL LIKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2ig7A
Description:	No description for 2ig7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits