YRC Public Data Repository - Protein Structure Prediction

Protein:	YCFM_ECOLI
Organism:	Escherichia coli
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCFM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|30040884, gi\|... - gi\|30062638\|ref\|NP_836809.1\| hypothetical protein S1189 [Shigella flexneri 2a str. 2457T], gi\|300408...	265.0	[0..1]	[213..1]
gi\|91210260, gi\|... - gi\|91210260\|ref\|YP_540246.1\| fibronectin-binding protein B [Escherichia coli UTI89], gi\|91071834\|gb\|... gi\|4062669, gi\|4... - dbj\|BAA35920.1\| Fibronectin-binding protein B [Escherichia coli K12], dbj\|BAA35912.1\| Fibronectin-b...	263.0	[0..1]	[213..2]
gi\|26107649, gi\|... - gi\|26247248\|ref\|NP_753288.1\| hypothetical protein c1378 [Escherichia coli CFT073], gi\|26107649\|gb\|AA...	263.0	[0..1]	[213..2]
gi\|82544427, gi\|... - gi\|82544427\|ref\|YP_408374.1\| hypothetical protein SBO_1956 [Shigella boydii Sb227], gi\|81245838\|gb\|A...	260.0	[0..1]	[212..1]
gi\|75195288 - gi\|75195288\|ref\|ZP_00705358.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75190162 - gi\|75190162\|ref\|ZP_00703429.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|83584872 - gi\|83584872\|ref\|ZP_00923530.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|83569573 - gi\|83569573\|ref\|ZP_00921025.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75511406 - gi\|75511406\|ref\|ZP_00734089.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75255620 - gi\|75255620\|ref\|ZP_00727399.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75239602 - gi\|75239602\|ref\|ZP_00723569.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75234213 - gi\|75234213\|ref\|ZP_00718606.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75228224 - gi\|75228224\|ref\|ZP_00714883.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75208968 - gi\|75208968\|ref\|ZP_00709238.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ...	257.0	[0..4]	[213..1]
gi\|75175772 - gi\|75175772\|ref\|ZP_00695972.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ...	255.0	[0..4]	[212..1]
gi\|59711744, gi\|... - gi\|59711744\|ref\|YP_204520.1\| putative lipoprotein [Vibrio fischeri ES114], gi\|59479845\|gb\|AAW85632.1...	230.0	[0..56]	[213..18]
gi\|110805119, gi... - gi\|110805119\|ref\|YP_688639.1\| hypothetical protein SFV_1125 [Shigella flexneri 5 str. 8401], gi\|1106...	228.0	[0..1]	[188..1]
gi\|24112510, gi\|... - gi\|24112510\|ref\|NP_707020.1\| hypothetical protein SF1109 [Shigella flexneri 2a str. 301], gi\|2405140...	228.0	[0..1]	[188..2]
gi\|68546579, gi\|... - gi\|68546579\|ref\|ZP_00586125.1\| conserved hypothetical protein [Shewanella amazonensis SB2B], gi\|6851...	228.0	[0..55]	[212..22]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKMSRYALI TALAMFLAGC VGQREPAPVE EVKPAPEQPA EPQQPVPTVP SVPTIPQQPG  60
   61 PIEHEDQTAP PAPHIRHYDW NGAMQPMVSK MLGADGVTAG SVLLVDSVNN RTNGSLNAAE 120
  121 ATETLRNALA NNGKFTLVSA QQLSMAKQQL GLSPQDSLGT RSKAIGIARN VGAHYVLYSS 180
  181 ASGNVNAPTL QMQLMLVQTG EIIWSGKGAV SQQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits