YRC Public Data Repository - Protein Structure Prediction

Protein:	YCFJ_ECOLI
Organism:	Escherichia coli
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCFJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26247253, gi\|... - gi\|26247253\|ref\|NP_753293.1\| hypothetical protein c1383 [Escherichia coli CFT073], gi\|26107654\|gb\|AA...	179.0	[0..2]	[179..15]
gi\|62127365, gi\|... - gi\|62179732\|ref\|YP_216149.1\| hypothetical protein SC1162 [Salmonella enterica subsp. enterica serova... gi\|199603046, gi... - gi\|200390601\|ref\|ZP_03217212.1\| surface antigen domain protein [Salmonella enterica subsp. enterica ... gi\|197939860, gi... - gi\|198245344\|ref\|YP_002215926.1\| surface antigen domain protein [Salmonella enterica subsp. enterica... gi\|195630321, gi... - gi\|195874169\|ref\|ZP_02701011.2\| surface antigen domain protein [Salmonella enterica subsp. enterica ...	179.0	[0..1]	[178..1]
gi\|224468809, gi... - gi\|224584282\|ref\|YP_002638080.1\| putative secreted protein [Salmonella enterica subsp. enterica sero... gi\|213416613 - gi\|213416613\|ref\|ZP_03349757.1\| hypothetical protein Salmonentericaenterica_00973 [Salmonella enteri... gi\|205347231, gi... - gi\|205360760\|ref\|ZP_02686253.2\| surface antigen domain protein [Salmonella enterica subsp. enterica ... gi\|214003110 - gi\|214003110\|ref\|ZP_03413845.1\| hypothetical protein Salmonellentericaenterica_23601 [Salmonella ent... gi\|213622497 - gi\|213622497\|ref\|ZP_03375280.1\| hypothetical protein SentesTyp_35273 [Salmonella enterica subsp. ent... gi\|205321953, gi... - gi\|205357396\|ref\|ZP_02347377.2\| surface antigen domain protein [Salmonella enterica subsp. enterica ... gi\|204930700, gi... - gi\|204930700\|ref\|ZP_03221573.1\| surface antigen domain protein [Salmonella enterica subsp. enterica ... gi\|205360066, gi... - gi\|205360066\|ref\|ZP_02834315.2\| surface antigen domain protein [Salmonella enterica subsp. enterica ... gi\|205329778, gi... - gi\|205357742\|ref\|ZP_02573103.2\| surface antigen domain protein [Salmonella enterica subsp. enterica ... gi\|194456392, gi... - gi\|194470028\|ref\|ZP_03076012.1\| surface antigen domain protein [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=ycfJ] [protein=hypothetical protein] [protein_id=YP_005236969.1] [location=1254100..1254639] gi\|194447359, gi... - gi\|194447359\|ref\|YP_002045211.1\| hypothetical protein SeHA_C1326 [Salmonella enterica subsp. enteric... gi\|197248493, gi... - gi\|197248493\|ref\|YP_002146830.1\| surface antigen domain protein [Salmonella enterica subsp. enterica... gi\|194711255, gi... - gi\|194735753\|ref\|YP_002114217.1\| surface antigen domain protein [Salmonella enterica subsp. enterica... gi\|197288136, gi... - gi\|197288136\|gb\|EDY27523.1\| surface antigen domain protein [Salmonella enterica subsp. enterica sero... gi\|205332734, gi... - gi\|205332734\|gb\|EDZ19498.1\| surface antigen domain protein [Salmonella enterica subsp. enterica sero... gi\|194445937, gi... - gi\|194445937\|ref\|YP_002040466.1\| 17 kDa surface antigen [Salmonella enterica subsp. enterica serovar... gi\|205336785, gi... - gi\|205336785\|gb\|EDZ23549.1\| surface antigen domain protein [Salmonella enterica subsp. enterica sero... gi\|25325165, gi\|... - gi\|25325165\|pir\|\|AE0644 probable secreted protein STY1252 [imported] - Salmonella enterica subsp. en... gi\|16419729, gi\|... - gi\|16764567\|ref\|NP_460182.1\| hypothetical protein STM1212 [Salmonella typhimurium LT2], gi\|16419729\|... gi\|29137771, gi\|... - gi\|29142142\|ref\|NP_805484.1\| hypothetical protein t1708 [Salmonella enterica subsp. enterica serovar... gi\|16760087 - gi\|16760087\|ref\|NP_455704.1\| hypothetical protein STY1252 [Salmonella enterica subsp. enterica serov...	178.0	[0..1]	[178..1]
gi\|91071839, gi\|... - gi\|91210265\|ref\|YP_540251.1\| hypothetical protein UTI89_C1238 [Escherichia coli UTI89], gi\|91071839\|... gi\|226898114, gi... - gi\|237706904\|ref\|ZP_04537385.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	178.0	[0..2]	[178..15]
gi\|15801227, gi\|... - gi\|15801227\|ref\|NP_287244.1\| hypothetical protein Z1749 [Escherichia coli O157:H7 EDL933], gi\|125146... gi\|168783480, gi... - gi\|188999143\|gb\|EDU68129.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4076], g... gi\|13360952, gi\|... - gi\|15830742\|ref\|NP_309515.1\| hypothetical protein ECs1488 [Escherichia coli O157:H7], gi\|13360952\|db... gi\|189370397, gi... - gi\|189370397\|gb\|EDU88813.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189375512, gi... - gi\|189375512\|gb\|EDU93928.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC508], gi... gi\|187767896, gi... - gi\|187776319\|ref\|ZP_02801802.2\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4196... gi\|13360952, gi\|... - gi\|15830742\|ref\|NP_309515.1\| hypothetical protein ECs1488 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|188014639, gi... - gi\|188014639\|gb\|EDU52761.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189365178, gi... - gi\|189365178\|gb\|EDU83594.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4501], g... gi\|208822790, gi... - gi\|208822790\|ref\|ZP_03263109.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4042... gi\|209398929, gi... - gi\|209398929\|ref\|YP_002269955.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC411... gi\|217328028, gi... - gi\|217328028\|ref\|ZP_03444110.1\| surface antigen domain protein [Escherichia coli O157:H7 str. TW1458... gi\|189402501, gi... - gi\|189402501\|ref\|ZP_02782832.2\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4401... gi\|189403587, gi... - gi\|189403587\|ref\|ZP_02796343.2\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4486... gi\|254591893, gi... - gi\|254792493\|ref\|YP_003077330.1\| hypothetical protein ECSP_1412 [Escherichia coli O157:H7 str. TW143... gi\|209773042, gi... - pir\|\|H90814 hypothetical protein ECs1488 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|208727231, gi... - gi\|208807430\|ref\|ZP_03249767.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4206... gi\|208816174, gi... - gi\|208816174\|ref\|ZP_03257353.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4045...	178.0	[0..1]	[179..1]
gi\|110641286, gi... - gi\|110641286\|ref\|YP_669016.1\| hypothetical protein ECP_1102 [Escherichia coli 536], gi\|110342878\|gb\|... gi\|115512419, gi... - gi\|117623295\|ref\|YP_852208.1\| hypothetical protein APECO1_191 [Escherichia coli APEC O1], gi\|1155124... gi\|191173125, gi... - gi\|191173125\|ref\|ZP_03034658.1\| surface antigen domain protein [Escherichia coli F11], gi\|190906670\|... gi\|215264393, gi... - gi\|215486321\|ref\|YP_002328752.1\| hypothetical protein E2348C_1202 [Escherichia coli O127:H6 str. E23... gi\|218364760, gi... - gi\|218557991\|ref\|YP_002390904.1\| hypothetical protein ECS88_1124 [Escherichia coli S88], gi\|21836476... gi\|218426626, gi... - gi\|218689062\|ref\|YP_002397274.1\| hypothetical protein ECED1_1253 [Escherichia coli ED1a], gi\|2184266...	176.0	[0..1]	[178..1]
gi\|213857237 - gi\|213857237\|ref\|ZP_03384208.1\| hypothetical protein SentesT_18825 [Salmonella enterica subsp. enter... gi\|213649267 - gi\|213649267\|ref\|ZP_03379320.1\| hypothetical protein SentesTy_19490 [Salmonella enterica subsp. ente... gi\|213425034 - gi\|213425034\|ref\|ZP_03357784.1\| hypothetical protein SentesTyphi_04635 [Salmonella enterica subsp. e... gi\|238910968 - gi\|238910968\|ref\|ZP_04654805.1\| hypothetical protein SentesTe_07512 [Salmonella enterica subsp. ente... gi\|56413803, gi\|... - gi\|56413803\|ref\|YP_150878.1\| hypothetical protein SPA1639 [Salmonella enterica subsp. enterica serov...	169.0	[0..5]	[178..1]
gi\|75511401 - gi\|75511401\|ref\|ZP_00734084.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli 53638... gi\|75255625 - gi\|75255625\|ref\|ZP_00727404.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli E22] gi\|75234218 - gi\|75234218\|ref\|ZP_00718611.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli E1100... gi\|75228219 - gi\|75228219\|ref\|ZP_00714878.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli B7A] gi\|75208963 - gi\|75208963\|ref\|ZP_00709233.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli B171] gi\|75195293 - gi\|75195293\|ref\|ZP_00705363.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli HS] gi\|75190167 - gi\|75190167\|ref\|ZP_00703434.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli E2437... gi\|110614672, gi... - gi\|110805124\|ref\|YP_688644.1\| hypothetical protein SFV_1130 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|75175767 - gi\|75175767\|ref\|ZP_00695967.1\| COG3134: Predicted outer membrane lipoprotein [Shigella boydii BS512] gi\|83584877 - gi\|83584877\|ref\|ZP_00923535.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli 101-1... gi\|83569567 - gi\|83569567\|ref\|ZP_00921019.1\| COG3134: Predicted outer membrane lipoprotein [Shigella dysenteriae 1...	168.0	[0..5]	[179..1]
gi\|75239607 - gi\|75239607\|ref\|ZP_00723574.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli F11]	167.0	[0..5]	[178..1]
Q669P0\|Q669P0_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|108812170, gi... - gi\|229902492\|ref\|ZP_04517611.1\| hypothetical protein YP516_2235 [Yersinia pestis Nepal516], gi\|22968... gi\|108807896, gi... - gi\|108807896\|ref\|YP_651812.1\| hypothetical protein YPA_1901 [Yersinia pestis Antiqua], gi\|108779809\|... gi\|167054713, gi... - gi\|167426358\|ref\|ZP_02318111.1\| surface antigen domain protein [Yersinia pestis biovar Mediaevalis s... gi\|152958590, gi... - gi\|153947095\|ref\|YP_001400574.1\| hypothetical protein YpsIP31758_1597 [Yersinia pseudotuberculosis I... gi\|166960355, gi... - gi\|167421870\|ref\|ZP_02313623.1\| surface antigen domain protein [Yersinia pestis biovar Orientalis st... gi\|149366411, gi... - gi\|149366411\|ref\|ZP_01888445.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149290785\|... gi\|167048878, gi... - gi\|167401773\|ref\|ZP_02307264.1\| surface antigen domain protein [Yersinia pestis biovar Antiqua str. ... gi\|145599107, gi... - gi\|145599107\|ref\|YP_001163183.1\| hypothetical protein YPDSF_1825 [Yersinia pestis Pestoides F], gi\|1... gi\|166210468, gi... - gi\|166210468\|ref\|ZP_02236503.1\| surface antigen domain protein [Yersinia pestis biovar Antiqua str. ... gi\|51596766, gi\|... - gi\|51596766\|ref\|YP_070957.1\| hypothetical protein YPTB2444 [Yersinia pseudotuberculosis IP 32953], g... gi\|186895834, gi... - gi\|186895834\|ref\|YP_001872946.1\| hypothetical protein YPTS_2528 [Yersinia pseudotuberculosis PB1/+],... gi\|25325162 - pir\|\|AC0198 probable exported protein YPO1624 [imported] - Yersinia pestis (strain CO92) gi\|170023946, gi... - gi\|170023946\|ref\|YP_001720451.1\| hypothetical protein YPK_1705 [Yersinia pseudotuberculosis YPIII], ... gi\|115347371, gi... - gi\|218928760\|ref\|YP_002346635.1\| hypothetical protein YPO1624 [Yersinia pestis CO92], gi\|16121892\|re... gi\|229689334, gi... - gi\|229843726\|ref\|ZP_04463869.1\| hypothetical protein YPF_2122 [Yersinia pestis biovar Orientalis str... gi\|229841609, gi... - gi\|229841609\|ref\|ZP_04461767.1\| hypothetical protein YPH_4000 [Yersinia pestis biovar Orientalis str... gi\|165992686, gi... - gi\|166008304\|ref\|ZP_02229202.1\| surface antigen domain protein [Yersinia pestis biovar Antiqua str. ... gi\|165938443, gi... - gi\|165938443\|ref\|ZP_02227000.1\| surface antigen domain protein [Yersinia pestis biovar Orientalis st... gi\|229894468, gi... - gi\|229894468\|ref\|ZP_04509650.1\| hypothetical protein YPS_2244 [Yersinia pestis Pestoides A], gi\|2297... gi\|165925546, gi... - gi\|165925546\|ref\|ZP_02221378.1\| surface antigen domain protein [Yersinia pestis biovar Orientalis st...	162.0	[0..1]	[178..1]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKSMLAGIG IGVAAALGVA AVASLNVFER GPQYAQVVSA TPIKETVKTP RQECRNVTVT  60
   61 HRRPVQDENR ITGSVLGAVA GGVIGHQFGG GRGKDVATVV GALGGGYAGN QIQGSLQESD 120
  121 TYTTTQQRCK TVYDKSEKML GYDVTYKIGD QQGKIRMDRD PGTQIPLDSN GQLILNNKV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits