YRC Public Data Repository - Protein Structure Prediction

Protein:	YCFC_ECOLI
Organism:	Escherichia coli
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCFC_ECOLI.

Description	E-value	Query Range	Subject Range
HFLD_SHIFL - High frequency lysogenization protein HflD homolog OS=Shigella flexneri GN=hflD PE=3 SV=2 HFLD_SHIF8 - High frequency lysogenization protein HflD homolog OS=Shigella flexneri serotype 5b (strain 8401) GN... gi\|30040927, gi\|... - gi\|30062679\|ref\|NP_836850.1\| hypothetical protein S1234 [Shigella flexneri 2a str. 2457T], gi\|300409... gi\|56479837, gi\|... - gi\|56479837\|ref\|NP_707061.2\| hypothetical protein SF1151 [Shigella flexneri 2a str. 301], gi\|5638338...	315.0	[0..1]	[213..1]
HFLD_SHIBS - High frequency lysogenization protein HflD homolog OS=Shigella boydii serotype 4 (strain Sb227) GN=h... HFLD_SHIB3 - High frequency lysogenization protein HflD homolog OS=Shigella boydii serotype 18 (strain CDC 3083-9...	315.0	[0..1]	[213..1]
HFLD_ECOSM - High frequency lysogenization protein HflD OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hflD PE=3... HFLD_ECO27 - High frequency lysogenization protein HflD OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=h... gi\|190906675, gi... - gi\|191173130\|ref\|ZP_03034663.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190906675\|... HFLD_ECOL6, YCFC... - UPF0274 protein ycfC OS=Escherichia coli O6 GN=ycfC PE=3 SV=2, High frequency lysogenization protein... HFLD_ECOL6 - High frequency lysogenization protein HflD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / ... HFLD_ECO81 - High frequency lysogenization protein HflD OS=Escherichia coli O81 (strain ED1a) GN=hflD PE=3 SV=1 HFLD_ECO45 - High frequency lysogenization protein HflD OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=hflD P... HFLD_ECO7I - High frequency lysogenization protein HflD OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=hflD ... sp\|B7UQ41\|HFLD_ECO27 - High frequency lysogenization protein hflD OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=h...	315.0	[0..1]	[213..1]
gi\|197301163, gi... - gi\|197301163\|ref\|ZP_02664198.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YCFC_SALTY - UPF0274 protein ycfC OS=Salmonella typhimurium GN=ycfC PE=3 SV=2 gi\|197265723, gi... - gi\|197265723\|ref\|ZP_03165797.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|200390142, gi... - gi\|200390142\|ref\|ZP_03216753.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... HFLD_SALTY - High frequency lysogenization protein HflD homolog OS=Salmonella typhimurium GN=hflD PE=3 SV=2 HFLD_SALPK - High frequency lysogenization protein HflD homolog OS=Salmonella paratyphi A (strain AKU_12601) GN=h... HFLD_SALHS - High frequency lysogenization protein HflD homolog OS=Salmonella heidelberg (strain SL476) GN=hflD P... HFLD_SALNS - High frequency lysogenization protein HflD homolog OS=Salmonella newport (strain SL254) GN=hflD PE=3... HFLD_SALA4 - High frequency lysogenization protein HflD homolog OS=Salmonella agona (strain SL483) GN=hflD PE=3 S... gi\|194458964, gi... - gi\|194472600\|ref\|ZP_03078584.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YCFC_SALPA, HFLD... - UPF0274 protein ycfC OS=Salmonella paratyphi A GN=ycfC PE=3 SV=1, High frequency lysogenization prot... gi\|195630375, gi... - gi\|195630375\|gb\|EDX49001.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... HFLD_SALPB - High frequency lysogenization protein HflD homolog OS=Salmonella paratyphi B (strain ATCC BAA-1250 /... YCFC_SALPB, HFLD... - UPF0274 protein ycfC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ycfC PE=3 SV=1, High... gi\|205360750, gi... - gi\|205360750\|ref\|ZP_02686227.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205341205, gi... - gi\|205360060\|ref\|ZP_02834340.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... HFLD_SALTY - High frequency lysogenization protein HflD homolog OS=Salmonella typhimurium (strain LT2 / SGSC1412 ... HFLD_SALPA - High frequency lysogenization protein HflD homolog OS=Salmonella paratyphi A (strain ATCC 9150 / SAR... gi\|205357754, gi... - gi\|205357754\|ref\|ZP_02573076.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205357419, gi... - gi\|205357419\|ref\|ZP_02347545.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205336724, gi... - gi\|205359346\|ref\|ZP_02669239.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205332727, gi... - gi\|205358667\|ref\|ZP_02658173.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ...	312.0	[0..1]	[213..1]
gi\|75195313 - gi\|75195313\|ref\|ZP_00705383.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|75190218 - gi\|75190218\|ref\|ZP_00703485.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|83587304 - gi\|83587304\|ref\|ZP_00925932.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|124529877, gi... - gi\|124529877\|ref\|ZP_01700721.1\| protein of unknown function DUF489 [Escherichia coli B], gi\|12449958... gi\|75511662 - gi\|75511662\|ref\|ZP_00734309.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|75255664 - gi\|75255664\|ref\|ZP_00727436.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|75228456 - gi\|75228456\|ref\|ZP_00715096.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|75214687 - gi\|75214687\|ref\|ZP_00713198.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|75209212 - gi\|75209212\|ref\|ZP_00709459.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche...	312.0	[0..2]	[213..4]
gi\|47168665, gi\|... - gi\|51247347\|pdb\|1SDI\|A Chain A, 1.65 A Structure Of Escherichia Coli Ycfc Gene Product, gi\|47168665\|...	312.0	[0..2]	[213..2]
gi\|189405958, gi... - gi\|189405958\|ref\|ZP_02825463.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]... gi\|189367169, gi... - gi\|189404164\|ref\|ZP_02787556.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501... gi\|208732572, gi... - gi\|208815924\|ref\|ZP_03257103.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208806933, gi... - gi\|208806933\|ref\|ZP_03249270.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|187768513, gi... - gi\|187776190\|ref\|ZP_02801062.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196... HFLD_ECO57 - High frequency lysogenization protein HflD OS=Escherichia coli O157:H7 GN=hflD PE=3 SV=1 gi\|168787607, gi... - gi\|189372448\|gb\|EDU90864.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189402306, gi... - gi\|189402306\|ref\|ZP_02781478.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401... gi\|189010476, gi... - gi\|189010476\|ref\|ZP_02807476.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076... gi\|189360110, gi... - gi\|189360110\|gb\|EDU78529.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|188016024, gi... - gi\|188016024\|gb\|EDU54146.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|15801329, gi\|... - gi\|15801329\|ref\|NP_287346.1\| hypothetical protein Z1861 [Escherichia coli O157:H7 EDL933], gi\|125147... gi\|209772856, gi... - pir\|\|B85687 hypothetical protein ycfC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|254591992, gi... - gi\|254792592\|ref\|YP_003077429.1\| predicted lysogenization regulator [Escherichia coli O157:H7 str. T... gi\|15830858, gi\|... - gi\|15830858\|ref\|NP_309631.1\| hypothetical protein ECs1604 [Escherichia coli O157:H7 str. Sakai], gi\|... HFLD_ECO5E - High frequency lysogenization protein HflD OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=hfl... gi\|208738125, gi... - gi\|208822640\|ref\|ZP_03262959.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|217328146, gi... - gi\|217328146\|ref\|ZP_03444228.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458...	312.0	[0..1]	[213..1]
gi\|194433693, gi... - gi\|83569547\|ref\|ZP_00920999.1\| COG2915: Uncharacterized protein involved in purine metabolism [Shige...	312.0	[0..2]	[213..4]
gi\|75239630 - gi\|75239630\|ref\|ZP_00723597.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|91071862, gi\|... - gi\|91210288\|ref\|YP_540274.1\| hypothetical protein UTI89_C1261 [Escherichia coli UTI89], gi\|91071862\|... gi\|26107781, gi\|... - gi\|26247380\|ref\|NP_753420.1\| hypothetical protein c1511 [Escherichia coli CFT073], gi\|26107781\|gb\|AA... gi\|110342901, gi... - gi\|110641309\|ref\|YP_669039.1\| hypothetical protein ECP_1127 [Escherichia coli 536], gi\|110342901\|gb\|... gi\|115512441, gi... - gi\|117623317\|ref\|YP_852230.1\| hypothetical protein APECO1_214 [Escherichia coli APEC O1], gi\|1155124... gi\|227886511, gi... - gi\|227886511\|ref\|ZP_04004316.1\| Ycfc protein [Escherichia coli 83972], gi\|227836715\|gb\|EEJ47181.1\| Y... gi\|226898092, gi... - gi\|237706882\|ref\|ZP_04537363.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	312.0	[0..2]	[213..4]
gi\|75179246 - gi\|75179246\|ref\|ZP_00699264.1\| COG2915: Uncharacterized protein involved in purine metabolism [Shige...	312.0	[0..2]	[213..4]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKNYYDITL ALAGICQSAR LVQQLAHQGH CDADALHVSL NSIIDMNPSS TLAVFGGSEA  60
   61 NLRVGLETLL GVLNASSRQG LNAELTRYTL SLMVLERKLS SAKGALDTLG NRINGLQRQL 120
  121 EHFDLQSETL MSAMAAIYVD VISPLGPRIQ VTGSPAVLQS PQVQAKVRAT LLAGIRAAVL 180
  181 WHQVGGGRLQ LMFSRNRLTT QAKQILAHLT PEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.39794
Match:	1qz4A
Description:	Structure of hypothetical Escherichia coli protein ycfC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits