YRC Public Data Repository - Protein Structure Prediction

Protein:	YCEP_ECOLI, BSSS...
Organism:	Escherichia coli
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCEP_ECOLI, BSSS....

Description	E-value	Query Range	Subject Range
gi\|168467108, gi... - gi\|195630394\|gb\|EDX49020.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194403076, gi... - gi\|194444413\|ref\|YP_002040415.1\| hypothetical protein SNSL254_A1258 [Salmonella enterica subsp. ente... gi\|205322444, gi... - gi\|205322444\|gb\|EDZ10283.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205336410, gi... - gi\|205336410\|gb\|EDZ23174.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161614619, gi... - gi\|161614619\|ref\|YP_001588584.1\| biofilm formation regulatory protein BssS [Salmonella enterica subs... gi\|62127312, gi\|... - gi\|62179679\|ref\|YP_216096.1\| biofilm formation regulatory protein BssS [Salmonella enterica subsp. e... gi\|16419677, gi\|... - gi\|16419677\|gb\|AAL20091.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar... gi\|56413851, gi\|... - gi\|56413851\|ref\|YP_150926.1\| biofilm formation regulatory protein BssS [Salmonella enterica subsp. e... lcl\|NC_016856.1_... - [gene=bssS] [protein=biofilm formation regulatory protein BssS] [protein_id=YP_005236914.1] [locatio... gi\|200389519, gi... - gi\|200389519\|ref\|ZP_03216130.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197215282, gi... - gi\|197251579\|ref\|YP_002146882.1\| hypothetical protein SeAg_B2027 [Salmonella enterica subsp. enteric... gi\|197094251, gi... - gi\|197362774\|ref\|YP_002142411.1\| biofilm formation regulatory protein BssS [Salmonella enterica subs... gi\|238911019 - gi\|238911019\|ref\|ZP_04654856.1\| biofilm formation regulatory protein BssS [Salmonella enterica subsp...	169.0	[0..1]	[84..1]
gi\|205331902, gi... - gi\|205358788\|ref\|ZP_02659141.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205328042, gi... - gi\|205358035\|ref\|ZP_02575114.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205272881, gi... - gi\|205353100\|ref\|YP_002226901.1\| biofilm formation regulatory protein BssS [Salmonella enterica subs... gi\|204320150, gi... - gi\|204930691\|ref\|ZP_03221564.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197938857, gi... - gi\|198244341\|ref\|YP_002215976.1\| hypothetical protein SeD_A2211 [Salmonella enterica subsp. enterica... gi\|197300923, gi... - gi\|197300923\|ref\|ZP_02662298.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197265288, gi... - gi\|197265288\|ref\|ZP_03165362.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194710036, gi... - gi\|194734534\|ref\|YP_002114160.1\| hypothetical protein SeSA_A1229 [Salmonella enterica subsp. enteric... gi\|194456446, gi... - gi\|194470082\|ref\|ZP_03076066.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194449697, gi... - gi\|194449697\|ref\|YP_002045160.1\| biofilm formation regulatory protein BssS [Salmonella enterica subs... gi\|39546311 - gi\|39546311\|ref\|NP_460132.2\| putative cytoplasmic protein [Salmonella typhimurium LT2] gi\|224584335, gi... - gi\|224584335\|ref\|YP_002638133.1\| hypothetical protein SPC_2588 [Salmonella enterica subsp. enterica ... gi\|206709134, gi... - gi\|207857331\|ref\|YP_002243982.1\| biofilm formation regulatory protein BssS [Salmonella enterica subs... gi\|205360741, gi... - gi\|205360741\|ref\|ZP_02686023.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205341039, gi... - gi\|205360107\|ref\|ZP_02834600.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ...	168.0	[0..1]	[84..2]
gi\|13360902 - gi\|13360902\|dbj\|BAB34861.1\| hypothetical protein [Escherichia coli O157:H7] gi\|209773528, gi... - pir\|\|B85668 hypothetical protein yceP [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15801177, gi\|... - gi\|15801177\|ref\|NP_287194.1\| biofilm formation regulatory protein BssS [Escherichia coli O157:H7 EDL... gi\|251784591, gi... - gi\|251784591\|ref\|YP_002998895.1\| hypothetical protein B21_01064 [Escherichia coli BL21], gi\|24237686... gi\|253973067, gi... - gi\|254161166\|ref\|YP_003044274.1\| hypothetical protein ECB_01056 [Escherichia coli B str. REL606], gi... gi\|253977281, gi... - gi\|254287974\|ref\|YP_003053722.1\| hypothetical protein ECD_01056 [Escherichia coli BL21(DE3)], gi\|253... gi\|254591842, gi... - gi\|254792442\|ref\|YP_003077279.1\| regulator of biofilm formation [Escherichia coli O157:H7 str. TW143... gi\|124531151, gi... - gi\|124531151\|ref\|ZP_01701506.1\| conserved hypothetical protein [Escherichia coli B], gi\|124498770\|gb... gi\|218694594, gi... - gi\|218694594\|ref\|YP_002402261.1\| biofilm formation regulatory protein BssS [Escherichia coli 55989],... gi\|218700437, gi... - gi\|218700437\|ref\|YP_002408066.1\| biofilm formation regulatory protein BssS [Escherichia coli IAI39],... gi\|192957164, gi... - gi\|193069416\|ref\|ZP_03050370.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192957... gi\|194438032, gi... - gi\|194438032\|ref\|ZP_03070125.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442296... gi\|195935449 - gi\|195935449\|ref\|ZP_03080831.1\| biofilm formation regulatory protein BssS [Escherichia coli O157:H7 ... gi\|218553639, gi... - gi\|218553639\|ref\|YP_002386552.1\| biofilm formation regulatory protein BssS [Escherichia coli IAI1], ... gi\|169755472, gi... - gi\|170020544\|ref\|YP_001725498.1\| biofilm formation regulatory protein BssS [Escherichia coli ATCC 87... gi\|170679713, gi... - gi\|170679713\|ref\|YP_001744121.1\| hypothetical protein EcSMS35_2069 [Escherichia coli SMS-3-5], gi\|17... gi\|190901496, gi... - gi\|191168477\|ref\|ZP_03030265.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190901496\|... gi\|192927761, gi... - gi\|193064509\|ref\|ZP_03045589.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192927761\|... gi\|162139709, gi... - gi\|162139709\|ref\|NP_309465.3\| biofilm formation regulatory protein BssS [Escherichia coli O157:H7 st... gi\|161486510 - gi\|161486510\|ref\|NP_836769.2\| biofilm formation regulatory protein BssS [Shigella flexneri 2a str. 2...	168.0	[0..1]	[84..1]
gi\|209918314, gi... - gi\|209918314\|ref\|YP_002292398.1\| biofilm formation regulatory protein BssS [Escherichia coli SE11], ... gi\|217318978, gi... - gi\|217328551\|ref\|ZP_03444633.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|75210333, gi\|... - gi\|75210333\|ref\|ZP_00710495.1\| hypothetical protein EcolB_01002578 [Escherichia coli B171], gi\|19442... gi\|189370515, gi... - gi\|189405372\|ref\|ZP_02815002.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... gi\|75228328 - gi\|75228328\|ref\|ZP_00714978.1\| hypothetical protein EcolB7_01003338 [Escherichia coli B7A] gi\|189406212, gi... - gi\|189406212\|ref\|ZP_02827012.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]... gi\|75235936 - gi\|75235936\|ref\|ZP_00720073.1\| hypothetical protein EcolE1_01002450 [Escherichia coli E110019] gi\|188017985, gi... - gi\|188024530\|ref\|ZP_02772188.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113... gi\|75257496 - gi\|75257496\|ref\|ZP_00728999.1\| hypothetical protein EcolE2_01002751 [Escherichia coli E22] gi\|189402627, gi... - gi\|189402627\|ref\|ZP_02783657.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401... gi\|188489208, gi... - gi\|75513504\|ref\|ZP_00735908.1\| hypothetical protein Ecol5_01002494 [Escherichia coli 53638], gi\|1884... gi\|208737972, gi... - gi\|208822487\|ref\|ZP_03262806.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209396338, gi... - gi\|209396338\|ref\|YP_002269906.1\| hypothetical protein ECH74115_1439 [Escherichia coli O157:H7 str. E... gi\|208806490, gi... - gi\|208806490\|ref\|ZP_03248827.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208732740, gi... - gi\|208816092\|ref\|ZP_03257271.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|194419261, gi... - gi\|83570493\|ref\|ZP_00921937.1\| hypothetical protein Sdys1_01001117 [Shigella dysenteriae 1012], gi\|1... gi\|83586406 - gi\|83586406\|ref\|ZP_00925040.1\| hypothetical protein Ecol1_01002300 [Escherichia coli 101-1] gi\|75175813, gi\|... - gi\|75175813\|ref\|ZP_00696008.1\| hypothetical protein SboyB_01004130 [Shigella boydii BS512], gi\|18773... gi\|75190118, gi\|... - gi\|75190118\|ref\|ZP_00703385.1\| hypothetical protein EcolE_01003412 [Escherichia coli E24377A], gi\|15... gi\|75195244, gi\|... - gi\|75195244\|ref\|ZP_00705314.1\| hypothetical protein EcolH_01001033 [Escherichia coli HS], gi\|1571605... gi\|30062598, gi\|... - gi\|30062598\|ref\|NP_836769.1\| hypothetical protein S1144 [Shigella flexneri 2a str. 2457T], gi\|300408... gi\|38703930 - gi\|38703930\|ref\|NP_309465.2\| hypothetical protein ECs1438 [Escherichia coli O157:H7] gi\|187770416, gi... - gi\|187770416\|gb\|EDU34260.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168783590, gi... - gi\|188999084\|gb\|EDU68070.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168764472, gi... - gi\|189365526\|gb\|EDU83942.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189363037, gi... - gi\|189363037\|gb\|EDU81456.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|38703930 - gi\|38703930\|ref\|NP_309465.2\| hypothetical protein ECs1438 [Escherichia coli O157:H7 str. Sakai]	168.0	[0..1]	[84..2]
gi\|75240656 - gi\|75240656\|ref\|ZP_00724573.1\| hypothetical protein EcolF_01002374 [Escherichia coli F11] gi\|26247200, gi\|... - gi\|26247200\|ref\|NP_753240.1\| Hypothetical protein yceP [Escherichia coli CFT073], gi\|26107601\|gb\|AAN... gi\|227886582, gi... - gi\|227886582\|ref\|ZP_04004387.1\| biofilm formation regulatory protein BssS [Escherichia coli 83972], ... gi\|4062633, gi\|4... - dbj\|BAA35868.1\| unnamed protein product [Escherichia coli K12], dbj\|BAA35857.1\| unnamed protein pro... gi\|237706954, gi... - gi\|237706954\|ref\|ZP_04537435.1\| biofilm formation regulatory protein BssS [Escherichia sp. 3_2_53FAA... gi\|91071786, gi\|... - gi\|91210212\|ref\|YP_540198.1\| hypothetical protein YceP [Escherichia coli UTI89], gi\|91071786\|gb\|ABE0... gi\|115512370, gi... - gi\|117623246\|ref\|YP_852159.1\| biofilm formation regulatory protein BssS [Escherichia coli APEC O1], ...	167.0	[0..1]	[84..2]
gi\|25511786, gi\|... - gi\|25511786\|pir\|\|AB0638 conserved hypothetical protein STY1199 [imported] - Salmonella enterica subs... gi\|213977675 - gi\|213977675\|ref\|ZP_03404934.1\| biofilm formation regulatory protein BssS [Salmonella enterica subsp... gi\|213025551 - gi\|213025551\|ref\|ZP_03339998.1\| biofilm formation regulatory protein BssS [Salmonella enterica subsp... gi\|29142192, gi\|... - gi\|29142192\|ref\|NP_805534.1\| hypothetical protein t1759 [Salmonella enterica subsp. enterica serovar... gi\|16760037 - gi\|16760037\|ref\|NP_455654.1\| hypothetical protein STY1199 [Salmonella enterica subsp. enterica serov...	165.0	[0..1]	[84..2]
gi\|238789125, gi... - gi\|77974931\|ref\|ZP_00830469.1\| hypothetical protein YfreA_01001431 [Yersinia frederiksenii ATCC 3364...	165.0	[0..1]	[84..1]
gi\|77963599 - gi\|77963599\|ref\|ZP_00827407.1\| hypothetical protein YmolA_01000012 [Yersinia mollaretii ATCC 43969] gi\|77979985 - gi\|77979985\|ref\|ZP_00835400.1\| hypothetical protein YintA_01000033 [Yersinia intermedia ATCC 29909]	164.0	[0..1]	[84..1]
gi\|51596806, gi\|... - gi\|51596806\|ref\|YP_070997.1\| biofilm formation regulatory protein BssS [Yersinia pseudotuberculosis ... Q669K0\|Q669K0_YERPS - Putative uncharacterized protein yceP - Yersinia pseudotuberculosis gi\|169750448, gi... - gi\|170023914\|ref\|YP_001720419.1\| biofilm formation regulatory protein BssS [Yersinia pseudotuberculo... gi\|77629543, gi\|... - gi\|77629543\|ref\|ZP_00792129.1\| hypothetical protein YpseI_01000881 [Yersinia pseudotuberculosis IP 3...	163.0	[0..1]	[84..1]
gi\|77958121 - gi\|77958121\|ref\|ZP_00822160.1\| hypothetical protein YberA_01001636 [Yersinia bercovieri ATCC 43970]	161.0	[0..1]	[84..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKNNEVIQT HPLVGWDIST VDSYDALMLR LHYQTPNKSE QEGTEVGQTL WLTTDVARQF  60
   61 ISILEAGIAK IESGDFQVNE YRRH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits