YRC Public Data Repository - Protein Structure Prediction

Protein:	YCED_ECOLI
Organism:	Escherichia coli
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCED_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|24112494, gi\|... - gi\|24112494\|ref\|NP_707004.1\| hypothetical protein SF1092 [Shigella flexneri 2a str. 301], gi\|2405138... gi\|74311649, gi\|... - gi\|74311649\|ref\|YP_310068.1\| hypothetical protein SSON_1108 [Shigella sonnei Ss046], gi\|73855126\|gb\|... gi\|82544446, gi\|... - gi\|82544446\|ref\|YP_408393.1\| hypothetical protein SBO_1975 [Shigella boydii Sb227], gi\|81245857\|gb\|A... gi\|157160614, gi... - gi\|75195271\|ref\|ZP_00705341.1\| COG1399: Predicted metal-binding, possibly nucleic acid-binding prote... gi\|188493444, gi... - gi\|75513531\|ref\|ZP_00735935.1\| COG1399: Predicted metal-binding, possibly nucleic acid-binding prote... gi\|124532250, gi... - gi\|124532250\|ref\|ZP_01702169.1\| protein of unknown function DUF177 [Escherichia coli B], gi\|12449808... gi\|187429425, gi... - gi\|187732433\|ref\|YP_001880742.1\| hypothetical protein SbBS512_E2236 [Shigella boydii CDC 3083-94], g... gi\|170020517, gi... - gi\|170020517\|ref\|YP_001725471.1\| hypothetical protein EcolC_2513 [Escherichia coli ATCC 8739], gi\|16... gi\|30062622, gi\|... - gi\|30062622\|ref\|NP_836793.1\| hypothetical protein S1172 [Shigella flexneri 2a str. 2457T], gi\|300408... gi\|110614651, gi... - gi\|110805103\|ref\|YP_688623.1\| hypothetical protein SFV_1109 [Shigella flexneri 5 str. 8401], gi\|1106...	175.0	[0..1]	[173..1]
gi\|144978928, gi... - gi\|145628458\|ref\|ZP_01784258.1\| hypothetical protein CGSHi22121_05570 [Haemophilus influenzae 22.1-2... gi\|68248767, gi\|... - gi\|68248767\|ref\|YP_247879.1\| hypothetical protein NTHI0249 [Haemophilus influenzae 86-028NP], gi\|680...	174.0	[0..1]	[173..1]
gi\|145271151, gi... - gi\|145639783\|ref\|ZP_01795385.1\| hypothetical protein CGSHiII_03251 [Haemophilus influenzae PittII], ... gi\|53733118 - gi\|53733118\|ref\|ZP_00156002.2\| COG1399: Predicted metal-binding, possibly nucleic acid-binding prote...	173.0	[0..1]	[173..1]
gi\|229809820, gi... - gi\|229847277\|ref\|ZP_04467380.1\| hypothetical protein CGSHi7P49H1_00200 [Haemophilus influenzae 7P49H... gi\|229845462, gi... - gi\|229845462\|ref\|ZP_04465592.1\| hypothetical protein CGSHi6P18H1_05046 [Haemophilus influenzae 6P18H... gi\|145267436, gi... - gi\|145635292\|ref\|ZP_01790995.1\| hypothetical protein CGSHiAA_06979 [Haemophilus influenzae PittAA], ... gi\|42629171 - gi\|42629171\|ref\|ZP_00154720.1\| COG1399: Predicted metal-binding, possibly nucleic acid-binding prote...	173.0	[0..1]	[173..1]
YCED_HAEIN, Y159... - (P43790) Hypothetical protein HI0159, Uncharacterized protein HI_0159 OS=Haemophilus influenzae GN=H... Y159_HAEIN - Uncharacterized protein HI_0159 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd...	173.0	[0..1]	[173..1]
gi\|56413824, gi\|... - gi\|56413824\|ref\|YP_150899.1\| hypothetical protein SPA1661 [Salmonella enterica subsp. enterica serov... gi\|197362747, gi... - gi\|197362747\|ref\|YP_002142384.1\| hypothetical protein SSPA1545 [Salmonella enterica subsp. enterica ...	172.0	[0..1]	[173..1]
gi\|194442413, gi... - gi\|194442413\|ref\|YP_002040444.1\| hypothetical protein SNSL254_A1289 [Salmonella enterica subsp. ente... gi\|205341027, gi... - gi\|205341027\|gb\|EDZ27791.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16760066 - gi\|16760066\|ref\|NP_455683.1\| hypothetical protein STY1229 [Salmonella enterica subsp. enterica serov... gi\|195630407, gi... - gi\|195630407\|gb\|EDX49033.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168234492, gi... - gi\|205331593\|gb\|EDZ18357.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197247893, gi... - gi\|197247893\|ref\|YP_002146853.1\| hypothetical protein SeAg_B1996 [Salmonella enterica subsp. enteric... gi\|194736315, gi... - gi\|194736315\|ref\|YP_002114189.1\| hypothetical protein SeSA_A1260 [Salmonella enterica subsp. enteric... gi\|194468630, gi... - gi\|194468630\|ref\|ZP_03074614.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194451554, gi... - gi\|194451554\|ref\|YP_002045189.1\| hypothetical protein SeHA_C1304 [Salmonella enterica subsp. enteric... gi\|205328071, gi... - gi\|205328071\|gb\|EDZ14835.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167553652, gi... - gi\|205321975\|gb\|EDZ09814.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|213646388 - gi\|213646388\|ref\|ZP_03376441.1\| hypothetical protein SentesTy_03071 [Salmonella enterica subsp. ente... gi\|213581934 - gi\|213581934\|ref\|ZP_03363760.1\| hypothetical protein SentesTyph_12319 [Salmonella enterica subsp. en... YCED_SALTY - Uncharacterized protein yceD OS=Salmonella typhimurium GN=yceD PE=4 SV=1 gi\|204930874, gi... - gi\|204930874\|ref\|ZP_03221747.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|199601752, gi... - gi\|200389307\|ref\|ZP_03215918.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|198244444, gi... - gi\|198244444\|ref\|YP_002215948.1\| hypothetical protein SeD_A2179 [Salmonella enterica subsp. enterica... gi\|197241549, gi... - gi\|197263294\|ref\|ZP_03163368.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YCED_SALTY - Uncharacterized protein YceD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yceD... gi\|213425014 - gi\|213425014\|ref\|ZP_03357764.1\| hypothetical protein SentesTyphi_04515 [Salmonella enterica subsp. e... gi\|29137792, gi\|... - gi\|29142163\|ref\|NP_805505.1\| hypothetical protein t1730 [Salmonella enterica subsp. enterica serovar... gi\|213419207 - gi\|213419207\|ref\|ZP_03352273.1\| hypothetical protein Salmonentericaenterica_15849 [Salmonella enteri... YCED_SALTI - Uncharacterized protein yceD OS=Salmonella typhi GN=yceD PE=4 SV=1 gi\|207857303, gi... - gi\|207857303\|ref\|YP_002243954.1\| hypothetical protein SEN1859 [Salmonella enterica subsp. enterica s... YCED_SALTI - Uncharacterized protein YceD OS=Salmonella typhi GN=yceD PE=4 SV=1 gi\|205272856, gi... - gi\|205353075\|ref\|YP_002226876.1\| hypothetical protein SG1932 [Salmonella enterica subsp. enterica se... gi\|238910990 - gi\|238910990\|ref\|ZP_04654827.1\| hypothetical protein SentesTe_07622 [Salmonella enterica subsp. ente... YCED_SALTY - Uncharacterized protein yceD OS=Salmonella typhimurium GN=yceD PE=4 SV=1 gi\|62127341, gi\|... - gi\|62179708\|ref\|YP_216125.1\| hypothetical protein SC1138 [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=yceD] [protein=hypothetical protein] [protein_id=YP_005236946.1] [location=1233436..1233957]	172.0	[0..1]	[173..1]
gi\|50120725, gi\|... - gi\|50120725\|ref\|YP_049892.1\| hypothetical protein ECA1792 [Pectobacterium atrosepticum SCRI1043], gi...	169.0	[0..1]	[173..1]
gi\|52307975, gi\|... - gi\|52425923\|ref\|YP_089060.1\| hypothetical protein MS1868 [Mannheimia succiniciproducens MBEL55E], gi...	169.0	[0..1]	[173..1]
gi\|37526728, gi\|... - gi\|37526728\|ref\|NP_930072.1\| hypothetical protein plu2838 [Photorhabdus luminescens subsp. laumondii...	168.0	[0..1]	[172..1]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKVKLPLTL DPVRTAQKRL DYQGIYTPDQ VERVAESVVS VDSDVECSMS FAIDNQRLAV  60
   61 LNGDAKVTVT LECQRCGKPF THQVYTTYCF SPVRSDEQAE ALPEAYEPIE VNEFGEIDLL 120
  121 AMVEDEIILA LPVVPVHDSE HCEVSEADMV FGELPEEAQK PNPFAVLASL KRK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	54.017729
Match:	PF02620.8
Description:	No description for PF02620.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits