YRC Public Data Repository - Protein Structure Prediction

Protein:	PGAD_ECOLI, YCDP...
Organism:	Escherichia coli
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGAD_ECOLI, YCDP....

Description	E-value	Query Range	Subject Range
gi\|77963683 - gi\|77963683\|ref\|ZP_00827491.1\| hypothetical protein YmolA_01000096 [Yersinia mollaretii ATCC 43969]	201.0	[0..1]	[128..1]
gi\|77959420 - gi\|77959420\|ref\|ZP_00823440.1\| hypothetical protein YberA_01000383 [Yersinia bercovieri ATCC 43970]	200.0	[0..1]	[128..1]
gi\|77973223 - gi\|77973223\|ref\|ZP_00828773.1\| hypothetical protein YfreA_01002920 [Yersinia frederiksenii ATCC 3364...	198.0	[0..1]	[128..1]
gi\|77979813 - gi\|77979813\|ref\|ZP_00835229.1\| hypothetical protein YintA_01000308 [Yersinia intermedia ATCC 29909]	197.0	[0..1]	[128..1]
gi\|218364679, gi... - gi\|218557910\|ref\|YP_002390823.1\| putative inner membrane protein associated with biofilm formation [... gi\|91071687, gi\|... - gi\|91210113\|ref\|YP_540099.1\| hypothetical protein UTI89_C1084 [Escherichia coli UTI89], gi\|91071687\|... gi\|115512340, gi... - gi\|117623216\|ref\|YP_852129.1\| inner membrane protein [Escherichia coli APEC O1], gi\|115512340\|gb\|ABJ... gi\|26247045, gi\|... - gi\|26247045\|ref\|NP_753085.1\| hypothetical protein c1160 [Escherichia coli CFT073], gi\|26107445\|gb\|AA... gi\|237706993, gi... - gi\|237706993\|ref\|ZP_04537474.1\| inner membrane protein [Escherichia sp. 3_2_53FAA], gi\|226898203\|gb\|...	189.0	[0..1]	[137..1]
gi\|186698339, gi... - gi\|186895313\|ref\|YP_001872425.1\| haemin storage system, HmsS protein [Yersinia pseudotuberculosis PB... gi\|51596278, gi\|... - gi\|51596278\|ref\|YP_070469.1\| haemin storage system, HmsS protein [Yersinia pseudotuberculosis IP 329... Q66B28\|Q66B28_YERPS - Haemin storage system, HmsS protein - Yersinia pseudotuberculosis	189.0	[0..1]	[128..1]
gi\|149292522, gi... - gi\|149366109\|ref\|ZP_01888144.1\| haemin storage system, HmsS protein [Yersinia pestis CA88-4125], gi\|... gi\|165920922, gi... - gi\|165927254\|ref\|ZP_02223086.1\| putative biofilm PGA synthesis protein PgaD [Yersinia pestis biovar ... gi\|145210159, gi... - gi\|145598463\|ref\|YP_001162539.1\| haemin storage system, HmsS protein [Yersinia pestis Pestoides F], ... gi\|166009280, gi... - gi\|166009280\|ref\|ZP_02230178.1\| putative biofilm PGA synthesis protein PgaD [Yersinia pestis biovar ... gi\|166211182, gi... - gi\|166211182\|ref\|ZP_02237217.1\| putative biofilm PGA synthesis protein PgaD [Yersinia pestis biovar ... gi\|167401103, gi... - gi\|167401103\|ref\|ZP_02306606.1\| putative biofilm PGA synthesis protein PgaD [Yersinia pestis biovar ... gi\|167420042, gi... - gi\|167420042\|ref\|ZP_02311795.1\| putative biofilm PGA synthesis protein PgaD [Yersinia pestis biovar ... gi\|229702385, gi... - gi\|229894630\|ref\|ZP_04509811.1\| hemin storage system, HmsS protein [Yersinia pestis Pestoides A], gi... gi\|229897359, gi... - gi\|229897359\|ref\|ZP_04512515.1\| hemin storage system, HmsS protein [Yersinia pestis biovar Orientali... gi\|21959211, gi\|... - gi\|22126240\|ref\|NP_669663.1\| inner membrane protein [Yersinia pestis KIM], gi\|21959211\|gb\|AAM85914.1... gi\|1508787, gi\|1... - gi\|4106592\|emb\|CAA21347.1\| hmsS [Yersinia pestis], pir\|\|AE0238 heamin storage system, HmsS protein [... gi\|15979971, gi\|... - gi\|218929068\|ref\|YP_002346943.1\| haemin storage system, HmsS protein [Yersinia pestis CO92], gi\|1612... gi\|89104743, gi\|... - gi\|89104743\|ref\|ZP_01177278.1\| hypothetical protein Ypesb_01001289 [Yersinia pestis biovar Orientali... gi\|45441512, gi\|... - gi\|45441512\|ref\|NP_993051.1\| haemin storage system, HmsS protein [Yersinia pestis biovar Microtus st... gi\|108807333, gi... - gi\|108807333\|ref\|YP_651249.1\| haemin storage system, HmsS protein [Yersinia pestis Antiqua], gi\|1087... gi\|167466546 - gi\|167466546\|ref\|ZP_02331250.1\| putative biofilm PGA synthesis protein PgaD [Yersinia pestis FV-1] gi\|170024467, gi... - gi\|170024467\|ref\|YP_001720972.1\| haemin storage system, HmsS protein [Yersinia pseudotuberculosis YP... gi\|162421921, gi... - gi\|77634257\|ref\|ZP_00796361.1\| hypothetical protein YpesA_01002352 [Yersinia pestis Angola], gi\|1624... gi\|153947326, gi... - gi\|77629035\|ref\|ZP_00791621.1\| hypothetical protein YpseI_01000360 [Yersinia pseudotuberculosis IP 3...	188.0	[0..1]	[128..1]
gi\|110641204, gi... - gi\|110641204\|ref\|YP_668934.1\| hypothetical protein ECP_1020 [Escherichia coli 536], gi\|110342796\|gb\|... gi\|190907321, gi... - gi\|191172437\|ref\|ZP_03033978.1\| biofilm PGA synthesis protein PgaD [Escherichia coli F11], gi\|190907...	183.0	[0..1]	[136..1]
gi\|70733671, gi\|... - gi\|70733671\|ref\|YP_257311.1\| hypothetical protein PFL_0164 [Pseudomonas fluorescens Pf-5], gi\|683479...	173.0	[0..5]	[131..3]
gi\|77380411, gi\|... - gi\|77456408\|ref\|YP_345913.1\| haemin storage system, HmsS protein [Pseudomonas fluorescens Pf0-1], gi...	165.0	[0..5]	[129..3]

Back

Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLIITTRQ SPVRLLVDYV ATTILWTLFA LFIFLFAMDL LTGYYWQSEA RSRLQFYFLL  60
   61 AVANAVVLIV WALYNKLRFQ KQQHHAAYQY TPQEYAESLA IPDELYQQLQ KSHRMSVHFT 120
  121 SQGQIKMVVS EKALVRA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits