YRC Public Data Repository - Protein Structure Prediction

Protein:	YCCR_ECOLI
Organism:	Escherichia coli
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCCR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218557858, gi... - gi\|218557858\|ref\|YP_002390771.1\| hypothetical protein ECS88_0981 [Escherichia coli S88], gi\|21836462... gi\|227884081, gi... - gi\|227884081\|ref\|ZP_04001886.1\| regulator of competence-specific genes [Escherichia coli 83972], gi\|... gi\|226898266, gi... - gi\|237707056\|ref\|ZP_04537537.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|26246981, gi\|... - gi\|26246981\|ref\|NP_753021.1\| hypothetical protein c1096 [Escherichia coli CFT073], gi\|26107381\|gb\|AA... gi\|115512293, gi... - gi\|117623169\|ref\|YP_852082.1\| hypothetical protein APECO1_64 [Escherichia coli APEC O1], gi\|11551229... gi\|91071629, gi\|... - gi\|91210055\|ref\|YP_540041.1\| hypothetical protein UTI89_C1025 [Escherichia coli UTI89], gi\|91071629\|...	229.0	[0..1]	[209..1]
gi\|13360503, gi\|... - gi\|15830297\|ref\|NP_309070.1\| hypothetical protein ECs1043 [Escherichia coli O157:H7], gi\|13360503\|db... gi\|25367063, gi\|... - pir\|\|A85623 hypothetical protein Z1309 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12514144, gi\|... - gi\|15800818\|ref\|NP_286834.1\| hypothetical protein Z1309 [Escherichia coli O157:H7 EDL933], gi\|125141... gi\|208806538, gi... - gi\|208806538\|ref\|ZP_03248875.1\| TfoX family protein [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|195935146 - gi\|195935146\|ref\|ZP_03080528.1\| hypothetical protein EscherichcoliO157_01602 [Escherichia coli O157:... gi\|13360503, gi\|... - gi\|15830297\|ref\|NP_309070.1\| hypothetical protein ECs1043 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189376535, gi... - gi\|189376535\|gb\|EDU94951.1\| TfoX family protein [Escherichia coli O157:H7 str. EC508], gi\|168801339\|... gi\|189372719, gi... - gi\|189372719\|gb\|EDU91135.1\| TfoX family protein [Escherichia coli O157:H7 str. EC869], gi\|168787392\|... gi\|217325872, gi... - gi\|217325872\|ref\|ZP_03441956.1\| TfoX family protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|209399493, gi... - gi\|209399493\|ref\|YP_002269627.1\| TfoX family protein [Escherichia coli O157:H7 str. EC4115], gi\|2091... gi\|208737710, gi... - gi\|208822225\|ref\|ZP_03262544.1\| TfoX family protein [Escherichia coli O157:H7 str. EC4042], gi\|20873... gi\|208816272, gi... - gi\|208816272\|ref\|ZP_03257451.1\| TfoX family protein [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|168758915, gi... - gi\|189354352\|gb\|EDU72771.1\| TfoX family protein [Escherichia coli O157:H7 str. EC4401], gi\|168758915... gi\|168751280, gi... - gi\|188014688\|gb\|EDU52810.1\| TfoX family protein [Escherichia coli O157:H7 str. EC4113], gi\|168751280... gi\|189001364, gi... - gi\|189001364\|gb\|EDU70350.1\| TfoX family protein [Escherichia coli O157:H7 str. EC4076], gi\|168780906... gi\|168777452, gi... - gi\|187767339\|gb\|EDU31183.1\| TfoX family protein [Escherichia coli O157:H7 str. EC4196], gi\|168777452... gi\|168771741, gi... - gi\|189359570\|gb\|EDU77989.1\| TfoX family protein [Escherichia coli O157:H7 str. EC4486], gi\|168771741... gi\|189364956, gi... - gi\|189364956\|gb\|EDU83372.1\| TfoX family protein [Escherichia coli O157:H7 str. EC4501], gi\|168765226... gi\|254792159, gi... - gi\|254792159\|ref\|YP_003076996.1\| CRP-S promoter co-activator [Escherichia coli O157:H7 str. TW14359]...	228.0	[0..1]	[209..1]
gi\|157066160, gi... - gi\|75195148\|ref\|ZP_00705218.1\| COG3070: Regulator of competence-specific genes [Escherichia coli HS]...	228.0	[0..1]	[209..1]
gi\|81246128, gi\|... - gi\|82544717\|ref\|YP_408664.1\| hypothetical protein SBO_2272 [Shigella boydii Sb227], gi\|81246128\|gb\|A...	228.0	[0..1]	[209..1]
gi\|218322100, gi... - gi\|218709081\|ref\|YP_002416702.1\| hypothetical protein VS_1087 [Vibrio splendidus LGP32], gi\|21832210... gi\|85835727, gi\|... - gi\|86146464\|ref\|ZP_01064787.1\| hypothetical protein MED222_12653 [Vibrio sp. MED222], gi\|85835727\|gb...	219.0	[0..5]	[192..1]
gi\|84388500, gi\|... - gi\|84388500\|ref\|ZP_00991047.1\| hypothetical protein V12B01_06886 [Vibrio splendidus 12B01], gi\|84377...	219.0	[0..5]	[194..1]
gi\|77956763, gi\|... - gi\|77956763\|ref\|ZP_00820843.1\| COG3070: Regulator of competence-specific genes [Yersinia bercovieri ...	217.0	[0..1]	[206..1]
gi\|22126611, gi\|... - gi\|22126611\|ref\|NP_670034.1\| hypothetical protein y2733 [Yersinia pestis KIM], gi\|21959620\|gb\|AAM862... gi\|45441155, gi\|... - gi\|45441155\|ref\|NP_992694.1\| hypothetical protein YP_1328 [Yersinia pestis biovar Microtus str. 9100...	215.0	[0..1]	[205..30]
TFOY_VIBF1 - DNA transformation protein TfoX2 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tfoX2 PE=3 SV=1	215.0	[0..5]	[195..1]
gi\|90439668, gi\|... - gi\|90578835\|ref\|ZP_01234645.1\| hypothetical protein VAS14_03998 [Vibrio angustum S14], gi\|90439668\|g...	214.0	[0..5]	[192..1]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLSYKRIY KSQEYLATLG TIEYRSLFGS YSLTVDDTVF AMVSDGELYL RACEQSAQYC  60
   61 VKHPPVWLTY KKCGRSVTLN YYRVDESLWR NQLKLVRLSK YSLDAALKEK STR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.045757
Match:	2od0A
Description:	No description for 2od0A was found.

Predicted Domain #2

Region A:
Residues: [114-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTRERLKDLP NMSFHLEAIL GEVGIKDVRA LRILGAKMCW LRLRQQNSLV TEKILFMLEG  60
   61 AIIGIHEAAL PVARRQELAE WADSLTPKQE FPAELE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.11
Match:	1b22A
Description:	DNA repair protein Rad51, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits