YRC Public Data Repository - Protein Structure Prediction

Protein:	YCCJ_ECOLI
Organism:	Escherichia coli
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCCJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|73855037, gi\|... - gi\|74311560\|ref\|YP_309979.1\| hypothetical protein SSON_1013 [Shigella sonnei Ss046], gi\|73855037\|gb\|...	123.0	[0..1]	[75..1]
gi\|56128147, gi\|... - gi\|56413890\|ref\|YP_150965.1\| hypothetical protein SPA1732 [Salmonella enterica subsp. enterica serov... gi\|62179638, gi\|... - gi\|62179638\|ref\|YP_216055.1\| hypothetical protein SC1068 [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=yccJ] [protein=hypothetical protein] [protein_id=YP_005236859.1] [location=complement(1163319.... gi\|205272052, gi... - gi\|205352271\|ref\|YP_002226072.1\| hypothetical protein SG1007 [Salmonella enterica subsp. enterica se... gi\|206708263, gi... - gi\|207856460\|ref\|YP_002243111.1\| hypothetical protein SEN0982 [Salmonella enterica subsp. enterica s... gi\|200389949, gi... - gi\|200389949\|ref\|ZP_03216560.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|204320359, gi... - gi\|204930900\|ref\|ZP_03221773.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|197094290, gi... - gi\|197362813\|ref\|YP_002142450.1\| hypothetical protein SSPA1610 [Salmonella enterica subsp. enterica ... gi\|197936886, gi... - gi\|198242370\|ref\|YP_002215049.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|197212618, gi... - gi\|197248915\|ref\|YP_002145987.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|197263612, gi... - gi\|197263612\|ref\|ZP_03163686.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|194458523, gi... - gi\|194472159\|ref\|ZP_03078143.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|194712241, gi... - gi\|194736739\|ref\|YP_002114116.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|194402942, gi... - gi\|194444279\|ref\|YP_002040373.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|194450051, gi... - gi\|194450051\|ref\|YP_002045118.1\| hypothetical protein SeHA_C1228 [Salmonella enterica subsp. enteric... gi\|16764476, gi\|... - gi\|16764476\|ref\|NP_460091.1\| hypothetical protein STM1118 [Salmonella typhimurium LT2], gi\|16419634\|... gi\|195630082, gi... - gi\|195630082\|gb\|EDX48734.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168821762, gi... - gi\|205341670\|gb\|EDZ28434.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205337247, gi... - gi\|205337247\|gb\|EDZ24011.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205347405, gi... - gi\|205347405\|gb\|EDZ34036.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205332490, gi... - gi\|205332490\|gb\|EDZ19254.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168237181, gi... - gi\|197289786\|gb\|EDY29147.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|167552615, gi... - gi\|205322769\|gb\|EDZ10608.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|167993690, gi... - gi\|205328354\|gb\|EDZ15118.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|161614680, gi... - gi\|161614680\|ref\|YP_001588645.1\| hypothetical protein SPAB_02431 [Salmonella enterica subsp. enteric... gi\|238911061 - gi\|238911061\|ref\|ZP_04654898.1\| hypothetical protein SentesTe_07977 [Salmonella enterica subsp. ente...	121.0	[0..1]	[75..1]
gi\|213855891 - gi\|213855891\|ref\|ZP_03384131.1\| hypothetical protein SentesT_18400 [Salmonella enterica subsp. enter... gi\|213648757 - gi\|213648757\|ref\|ZP_03378810.1\| hypothetical protein SentesTy_16608 [Salmonella enterica subsp. ente... gi\|213621580 - gi\|213621580\|ref\|ZP_03374363.1\| hypothetical protein SentesTyp_30262 [Salmonella enterica subsp. ent... gi\|213579929 - gi\|213579929\|ref\|ZP_03361755.1\| hypothetical protein SentesTyph_01448 [Salmonella enterica subsp. en... gi\|214003495 - gi\|214003495\|ref\|ZP_03414230.1\| hypothetical protein Salmonellentericaenterica_25941 [Salmonella ent... gi\|213974073 - gi\|213974073\|ref\|ZP_03401332.1\| hypothetical protein Salmonellaentericaenterica_05349 [Salmonella en... gi\|213428509 - gi\|213428509\|ref\|ZP_03361259.1\| hypothetical protein SentesTyphi_25047 [Salmonella enterica subsp. e... gi\|213416803 - gi\|213416803\|ref\|ZP_03349947.1\| hypothetical protein Salmonentericaenterica_02032 [Salmonella enteri... gi\|213163115 - gi\|213163115\|ref\|ZP_03348825.1\| hypothetical protein Salmoneentericaenterica_25063 [Salmonella enter... gi\|213022118 - gi\|213022118\|ref\|ZP_03336565.1\| hypothetical protein Salmonelentericaenterica_05357 [Salmonella ente... gi\|25513139, gi\|... - gi\|25513139\|pir\|\|AH0632 conserved hypothetical protein STY1154 [imported] - Salmonella enterica subs... gi\|29142233, gi\|... - gi\|29142233\|ref\|NP_805575.1\| hypothetical protein t1802 [Salmonella enterica subsp. enterica serovar... gi\|16759996 - gi\|16759996\|ref\|NP_455613.1\| hypothetical protein STY1154 [Salmonella enterica subsp. enterica serov...	120.0	[0..1]	[75..1]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTQEAKAHH VGEWASLRNT SPEIAEAIFE VAGYDEKMAE KIWEEGSDEV LVKAFAKTDK  60
   61 DSLFWGEQTI ERKNV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.843	a.248.1	Description not found.
View	Download	0.790	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.618	a.4.12	TrpR-like
View	Download	0.601	a.77.1	DEATH domain
View	Download	0.490	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.490	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.461	a.60.2	RuvA domain 2-like
View	Download	0.355	a.163.1	Crustacean CHH/MIH/GIH neurohormone
View	Download	0.225	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.203	a.59.1	PAH2 domain
View	Download	0.201	d.45.1	ClpS-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits