YRC Public Data Repository - Protein Structure Prediction

Protein:	YCBL_ECOLI
Organism:	Escherichia coli
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCBL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|36785112, gi\|... - gi\|37525684\|ref\|NP_929028.1\| hypothetical protein plu1749 [Photorhabdus luminescens subsp. laumondii...	228.0	[0..1]	[215..1]
gi\|75241002, gi\|... - gi\|75241002\|ref\|ZP_00724891.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Escherichia ... gi\|91210029, gi\|... - gi\|91210029\|ref\|YP_540015.1\| hypothetical protein UTI89_C0999 [Escherichia coli UTI89], gi\|91071603\|... gi\|13360469, gi\|... - gi\|15830264\|ref\|NP_309037.1\| hypothetical protein ECs1010 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110342716, gi... - gi\|110641124\|ref\|YP_668854.1\| hypothetical protein ECP_0938 [Escherichia coli 536], gi\|110342716\|gb\|... gi\|209774728, gi... - pir\|\|H85618 hypothetical protein ycbL [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|13360469, gi\|... - gi\|15830264\|ref\|NP_309037.1\| hypothetical protein ECs1010 [Escherichia coli O157:H7], gi\|13360469\|db... gi\|26107354, gi\|... - gi\|26246954\|ref\|NP_752994.1\| hypothetical protein c1069 [Escherichia coli CFT073], gi\|26107354\|gb\|AA... gi\|12514099, gi\|... - gi\|15800788\|ref\|NP_286802.1\| hypothetical protein Z1274 [Escherichia coli O157:H7 EDL933], gi\|125140... gi\|168751191, gi... - gi\|188014715\|gb\|EDU52837.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC4... gi\|168757020, gi... - gi\|189355912\|gb\|EDU74331.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC4... gi\|168762935, gi... - gi\|189366788\|gb\|EDU85204.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC4... gi\|168769923, gi... - gi\|189361174\|gb\|EDU79593.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC4... gi\|187768360, gi... - gi\|187768360\|gb\|EDU32204.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC4... gi\|188998778, gi... - gi\|188998778\|gb\|EDU67764.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC4... gi\|254792126, gi... - gi\|254792126\|ref\|YP_003076963.1\| predicted metal-binding enzyme [Escherichia coli O157:H7 str. TW143... gi\|237707085, gi... - gi\|237707085\|ref\|ZP_04537566.1\| YcbL [Escherichia sp. 3_2_53FAA], gi\|226898295\|gb\|EEH84554.1\| YcbL [... gi\|227838860, gi... - gi\|227884108\|ref\|ZP_04001913.1\| zinc (Zn2+)-dependent hydrolase [Escherichia coli 83972], gi\|2278388... gi\|218364601, gi... - gi\|218557832\|ref\|YP_002390745.1\| putative metal-binding hydrolase [Escherichia coli S88], gi\|2183646... gi\|117623145, gi... - gi\|117623145\|ref\|YP_852058.1\| YcbL [Escherichia coli APEC O1], gi\|115512269\|gb\|ABJ00344.1\| YcbL [Esc... gi\|218426334, gi... - gi\|218688770\|ref\|YP_002396982.1\| putative metal-binding hydrolase [Escherichia coli ED1a], gi\|218426... gi\|168787357, gi... - gi\|189372736\|gb\|EDU91152.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC8... gi\|189375249, gi... - gi\|189375249\|gb\|EDU93665.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str. EC5... gi\|195939658 - gi\|195939658\|ref\|ZP_03085040.1\| YcbL [Escherichia coli O157:H7 str. EC4024] gi\|208806417, gi... - gi\|208806417\|ref\|ZP_03248754.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str.... gi\|208731452, gi... - gi\|208814804\|ref\|ZP_03255983.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str.... gi\|208738068, gi... - gi\|208822583\|ref\|ZP_03262902.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str.... gi\|209395793, gi... - gi\|209395793\|ref\|YP_002269599.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str... gi\|217321429, gi... - gi\|217325208\|ref\|ZP_03441292.1\| metallo-beta-lactamase family protein [Escherichia coli O157:H7 str....	226.0	[0..1]	[215..1]
gi\|77963110, gi\|... - gi\|77963110\|ref\|ZP_00826923.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Yersinia mol...	226.0	[0..1]	[215..1]
gi\|24051200, gi\|... - gi\|24112336\|ref\|NP_706846.1\| hypothetical protein SF0924 [Shigella flexneri 2a str. 301], gi\|2405120... gi\|110804936, gi... - gi\|110804936\|ref\|YP_688456.1\| hypothetical protein SFV_0929 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|124499414, gi... - gi\|124530127\|ref\|ZP_01700897.1\| beta-lactamase domain protein [Escherichia coli B], gi\|124499414\|gb\|... gi\|30062462, gi\|... - gi\|30062462\|ref\|NP_836633.1\| hypothetical protein S0988 [Shigella flexneri 2a str. 2457T], gi\|300407... gi\|169755599, gi... - gi\|170020671\|ref\|YP_001725625.1\| beta-lactamase domain-containing protein [Escherichia coli ATCC 873... gi\|218553514, gi... - gi\|218553514\|ref\|YP_002386427.1\| putative metal-binding hydrolase [Escherichia coli IAI1], gi\|218360... gi\|209918177, gi... - gi\|209918177\|ref\|YP_002292261.1\| hypothetical protein ECSE_0986 [Escherichia coli SE11], gi\|20991143... gi\|75229867, gi\|... - gi\|75229867\|ref\|ZP_00716390.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Escherichia ... gi\|75234390, gi\|... - gi\|75234390\|ref\|ZP_00718751.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Escherichia ... gi\|157160448, gi... - gi\|75195116\|ref\|ZP_00705186.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Escherichia ... gi\|194428338, gi... - gi\|75210383\|ref\|ZP_00710539.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Escherichia ... gi\|82544669, gi\|... - gi\|82544669\|ref\|YP_408616.1\| hypothetical protein SBO_2218 [Shigella boydii Sb227], gi\|81246080\|gb\|A... gi\|193064648, gi... - gi\|75257357\|ref\|ZP_00728873.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Escherichia ... gi\|74311485, gi\|... - gi\|74311485\|ref\|YP_309904.1\| hypothetical protein SSON_0930 [Shigella sonnei Ss046], gi\|73854962\|gb\|... gi\|75189982, gi\|... - gi\|75189982\|ref\|ZP_00703249.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Escherichia ... gi\|218351133, gi... - gi\|218694401\|ref\|YP_002402068.1\| putative metal-binding hydrolase [Escherichia coli 55989], gi\|21835...	226.0	[0..1]	[215..1]
gi\|194417373, gi... - gi\|83569152\|ref\|ZP_00920611.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Shigella dys...	226.0	[0..1]	[215..1]
gi\|77974868 - gi\|77974868\|ref\|ZP_00830406.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Yersinia fre...	226.0	[0..1]	[215..1]
gi\|167470986 - gi\|167470986\|ref\|ZP_02335690.1\| metallo-beta-lactamase family protein [Yersinia pestis FV-1] gi\|229903134, gi... - gi\|229903134\|ref\|ZP_04518247.1\| predicted metal-binding enzyme [Yersinia pestis Nepal516], gi\|229678... gi\|165924796, gi... - gi\|165924796\|ref\|ZP_02220628.1\| metallo-beta-lactamase family protein [Yersinia pestis biovar Orient... gi\|165991216, gi... - gi\|166009820\|ref\|ZP_02230718.1\| metallo-beta-lactamase family protein [Yersinia pestis biovar Antiqu... gi\|166211362, gi... - gi\|166211362\|ref\|ZP_02237397.1\| metallo-beta-lactamase family protein [Yersinia pestis biovar Antiqu... gi\|229697747, gi... - gi\|229841381\|ref\|ZP_04461540.1\| predicted metal-binding enzyme [Yersinia pestis biovar Orientalis st... gi\|167399873, gi... - gi\|167399873\|ref\|ZP_02305391.1\| metallo-beta-lactamase family protein [Yersinia pestis biovar Antiqu... gi\|229843486, gi... - gi\|229843486\|ref\|ZP_04463632.1\| predicted metal-binding enzyme [Yersinia pestis biovar Orientalis st... gi\|89104662, gi\|... - gi\|89104662\|ref\|ZP_01177199.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Yersinia pes... gi\|167419476, gi... - gi\|167419476\|ref\|ZP_02311229.1\| metallo-beta-lactamase family protein [Yersinia pestis biovar Orient... gi\|229700783, gi... - gi\|229895860\|ref\|ZP_04511030.1\| predicted metal-binding enzyme [Yersinia pestis Pestoides A], gi\|229... gi\|108778613, gi... - gi\|108806700\|ref\|YP_650616.1\| metallo-beta-lactamase superfamily protein [Yersinia pestis Antiqua], ... gi\|167424028, gi... - gi\|167424028\|ref\|ZP_02315781.1\| metallo-beta-lactamase family protein [Yersinia pestis biovar Mediae... gi\|21959651, gi\|... - gi\|22126639\|ref\|NP_670062.1\| metallo-beta-lactamase superfamily protein [Yersinia pestis KIM], gi\|21... gi\|25311006 - pir\|\|AC0172 metallo-beta-lactamase superfamily protein [imported] - Yersinia pestis (strain CO92) gi\|15979458, gi\|... - gi\|218928557\|ref\|YP_002346432.1\| metallo-beta-lactamase superfamily protein [Yersinia pestis CO92], ... gi\|162353592, gi... - gi\|77636029\|ref\|ZP_00798107.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Yersinia pes... gi\|45435870, gi\|... - gi\|45441011\|ref\|NP_992550.1\| metallo-beta-lactamase superfamily protein [Yersinia pestis biovar Micr... gi\|149291040, gi... - gi\|149366666\|ref\|ZP_01888700.1\| metallo-beta-lactamase superfamily protein [Yersinia pestis CA88-412... gi\|145211254, gi... - gi\|145599558\|ref\|YP_001163634.1\| metallo-beta-lactamase superfamily protein [Yersinia pestis Pestoid...	225.0	[0..1]	[215..1]
gi\|75178260, gi\|... - gi\|75178260\|ref\|ZP_00698314.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Shigella boy...	225.0	[0..1]	[215..1]
gi\|51589055, gi\|... - gi\|51595773\|ref\|YP_069964.1\| metallo-beta-lactamase superfamily protein [Yersinia pseudotuberculosis... gi\|117674110, gi... - gi\|77632393\|ref\|ZP_00794979.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Yersinia pse... gi\|170024877, gi... - gi\|170024877\|ref\|YP_001721382.1\| beta-lactamase domain-containing protein [Yersinia pseudotuberculos... Q66CH0\|Q66CH0_YERPS - Metallo-beta-lactamase superfamily protein - Yersinia pseudotuberculosis gi\|186894852, gi... - gi\|186894852\|ref\|YP_001871964.1\| beta-lactamase domain-containing protein [Yersinia pseudotuberculos...	225.0	[0..1]	[215..1]
gi\|82777549, gi\|... - gi\|82777549\|ref\|YP_403898.1\| hypothetical protein SDY_2330 [Shigella dysenteriae Sd197], gi\|81241697...	225.0	[0..1]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYRIIPVTA FSQNCSLIWC EQTRLAALVD PGGDAEKIKQ EVDDSGLTLM QILLTHGHLD  60
   61 HVGAAAELAQ HYGVPVFGPE KEDEFWLQGL PAQSRMFGLE ECQPLTPDRW LNEGDTISIG 120
  121 NVTLQVLHCP GHTPGHVVFF DDRAKLLISG DVIFKGGVGR SDFPRGDHNQ LISSIKDKLL 180
  181 PLGDDVIFIP GHGPLSTLGY ERLHNPFLQD EMPVW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	1xm8A
Description:	X-RAY STRUCTURE OF GLYOXALASE II FROM ARABIDOPSIS THALIANA GENE AT2G31350
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.31184084417389	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: