YRC Public Data Repository - Protein Structure Prediction

Protein:	YCBC_ECOLI
Organism:	Escherichia coli
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCBC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|46913983, gi\|... - gi\|54309547\|ref\|YP_130567.1\| hypothetical protein PBPRA2380 [Photobacterium profundum SS9], gi\|46913...	220.0	[0..2]	[259..1]
gi\|90413116, gi\|... - gi\|90413116\|ref\|ZP_01221113.1\| hypothetical protein P3TCK_00775 [Photobacterium profundum 3TCK], gi\|...	219.0	[0..2]	[259..1]
gi\|194431483, gi... - gi\|83571211\|ref\|ZP_00922652.1\| COG1434: Uncharacterized conserved protein [Shigella dysenteriae 1012...	218.0	[0..1]	[259..1]
gi\|192955941, gi... - gi\|75234397\|ref\|ZP_00718758.1\| COG1434: Uncharacterized conserved protein [Escherichia coli E110019]...	210.0	[0..1]	[259..1]
gi\|194413589, gi... - gi\|75210390\|ref\|ZP_00710546.1\| COG1434: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|110614476, gi... - gi\|110804928\|ref\|YP_688448.1\| hypothetical protein SFV_0921 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|30062454, gi\|... - gi\|30062454\|ref\|NP_836625.1\| hypothetical protein S0980 [Shigella flexneri 2a str. 2457T], gi\|300407... gi\|209911429, gi... - gi\|209918170\|ref\|YP_002292254.1\| hypothetical protein ECSE_0979 [Escherichia coli SE11], gi\|20991142... gi\|218351125, gi... - gi\|218694393\|ref\|YP_002402060.1\| hypothetical protein EC55989_0965 [Escherichia coli 55989], gi\|2183... gi\|56479770, gi\|... - gi\|56479770\|ref\|NP_706838.2\| hypothetical protein SF0916 [Shigella flexneri 2a str. 301], gi\|5638332... gi\|193064658, gi... - gi\|75257364\|ref\|ZP_00728880.1\| COG1434: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|75229874, gi\|... - gi\|75229874\|ref\|ZP_00716397.1\| COG1434: Uncharacterized conserved protein [Escherichia coli B7A], gi...	210.0	[0..1]	[259..1]
gi\|81241705, gi\|... - gi\|82777557\|ref\|YP_403906.1\| hypothetical protein SDY_2338 [Shigella dysenteriae Sd197], gi\|81241705...	210.0	[0..1]	[259..1]
gi\|227838867, gi... - gi\|227884115\|ref\|ZP_04001920.1\| inner membrane protein [Escherichia coli 83972], gi\|227838867\|gb\|EEJ... gi\|26107346, gi\|... - gi\|26246946\|ref\|NP_752986.1\| hypothetical protein c1061 [Escherichia coli CFT073], gi\|26107346\|gb\|AA... gi\|218426327, gi... - gi\|218688763\|ref\|YP_002396975.1\| hypothetical protein ECED1_0950 [Escherichia coli ED1a], gi\|2184263... gi\|75240995, gi\|... - gi\|75240995\|ref\|ZP_00724884.1\| COG1434: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|215264117, gi... - gi\|215486045\|ref\|YP_002328476.1\| hypothetical protein E2348C_0913 [Escherichia coli O127:H6 str. E23... gi\|110342709, gi... - gi\|110641117\|ref\|YP_668847.1\| hypothetical protein ECP_0931 [Escherichia coli 536], gi\|110342709\|gb\|...	210.0	[0..1]	[259..1]
gi\|82544659, gi\|... - gi\|82544659\|ref\|YP_408606.1\| hypothetical protein SBO_2208 [Shigella boydii Sb227], gi\|81246070\|gb\|A... gi\|187732229, gi... - gi\|75178273\|ref\|ZP_00698327.1\| COG1434: Uncharacterized conserved protein [Shigella boydii BS512], g...	210.0	[0..1]	[259..1]
gi\|86146468, gi\|... - gi\|86146468\|ref\|ZP_01064791.1\| hypothetical protein MED222_12673 [Vibrio sp. MED222], gi\|85835731\|gb...	208.0	[0..2]	[254..1]
gi\|74311477, gi\|... - gi\|74311477\|ref\|YP_309896.1\| hypothetical protein SSON_0922 [Shigella sonnei Ss046], gi\|73854954\|gb\|...	207.0	[0..1]	[259..1]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFTLKKVIG NMLLPLPLML LIIGAGLALL WFSRFQKTGK IFISIGWLAL LLLSLQPVAD  60
   61 RLLRPIESTY PTWNNSQKVD YIVVLGGGYT WNPQWAPSSN LINNSLPRLN EGIRLWRENP 120
  121 GSKLIFTGGV AKTNTVSTAE VGARVAQSLG VPREQIITLD LPKDTEEEAA AVKQAIGDAP 180
  181 FLLVTSASHL PRAMIFFQQE GLNPLPAPAN QLAIDSPLNP WERAIPSPVW LMHSDRVGYE 240
  241 TLGRIWQWLK GSSGEPRQE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.420216
Match:	PF02698.8
Description:	No description for PF02698.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits