YRC Public Data Repository - Protein Structure Prediction

Protein:	YBJP_ECOLI
Organism:	Escherichia coli
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBJP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26107288, gi\|... - gi\|26246888\|ref\|NP_752928.1\| putative lipoprotein [Escherichia coli CFT073], gi\|26107288\|gb\|AAN79471... gi\|227884171, gi... - gi\|227884171\|ref\|ZP_04001976.1\| lipoprotein [Escherichia coli 83972], gi\|227838923\|gb\|EEJ49389.1\| li... gi\|91209899, gi\|... - gi\|91209899\|ref\|YP_539885.1\| putative lipoprotein [Escherichia coli UTI89], gi\|91071473\|gb\|ABE06354.... gi\|237707171, gi... - gi\|237707171\|ref\|ZP_04537652.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	334.0	[0..1]	[171..9]
gi\|75189905, gi\|... - gi\|75189905\|ref\|ZP_00703172.1\| COG0174: Glutamine synthetase [Escherichia coli E24377A], gi\|15715723... gi\|192928887, gi... - gi\|75257537\|ref\|ZP_00729034.1\| COG0174: Glutamine synthetase [Escherichia coli E22], gi\|193064425\|re... gi\|209918114, gi... - gi\|209918114\|ref\|YP_002292198.1\| putative lipoprotein [Escherichia coli SE11], gi\|209911373\|dbj\|BAG7... gi\|193069338, gi... - gi\|75236078\|ref\|ZP_00720202.1\| COG0174: Glutamine synthetase [Escherichia coli E110019], gi\|19306933... gi\|218360219, gi... - gi\|218553451\|ref\|YP_002386364.1\| putative lipoprotein [Escherichia coli IAI1], gi\|218360219\|emb\|CAQ9... gi\|190903807, gi... - gi\|75230715\|ref\|ZP_00717186.1\| COG0174: Glutamine synthetase [Escherichia coli B7A], gi\|191166198\|re... gi\|194413721, gi... - gi\|75210539\|ref\|ZP_00710687.1\| COG0174: Glutamine synthetase [Escherichia coli B171], gi\|194428161\|r...	331.0	[0..1]	[171..1]
gi\|190907653, gi... - gi\|75240929\|ref\|ZP_00724818.1\| COG0174: Glutamine synthetase [Escherichia coli F11], gi\|191172126\|re... gi\|110641066, gi... - gi\|110641066\|ref\|YP_668796.1\| putative lipoprotein [Escherichia coli 536], gi\|110342658\|gb\|ABG68895....	330.0	[0..1]	[171..1]
gi\|75178331, gi\|... - gi\|75178331\|ref\|ZP_00698385.1\| COG0174: Glutamine synthetase [Shigella boydii BS512], gi\|187731148\|r...	329.0	[0..1]	[171..1]
gi\|214000339 - gi\|214000339\|ref\|ZP_03411074.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213052702 - gi\|213052702\|ref\|ZP_03345580.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213428037 - gi\|213428037\|ref\|ZP_03360787.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213647847 - gi\|213647847\|ref\|ZP_03377900.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213852496 - gi\|213852496\|ref\|ZP_03382028.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|29142425, gi\|... - gi\|29142425\|ref\|NP_805767.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|16759802 - gi\|16759802\|ref\|NP_455419.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|25332881, gi\|... - gi\|25332881\|pir\|\|AI0607 probable lipoprotein [imported] - Salmonella enterica subsp. enterica serova...	325.0	[0..1]	[171..1]
gi\|200390386, gi... - gi\|200390386\|ref\|ZP_03216997.1\| YbjP [Salmonella enterica subsp. enterica serovar Virchow str. SL491... gi\|205271922, gi... - gi\|205352141\|ref\|YP_002225942.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar G... gi\|197213708, gi... - gi\|197250005\|ref\|YP_002145845.1\| YbjP [Salmonella enterica subsp. enterica serovar Agona str. SL483]... gi\|197244057, gi... - gi\|197265802\|ref\|ZP_03165876.1\| YbjP [Salmonella enterica subsp. enterica serovar Saintpaul str. SAR... gi\|194447471, gi... - gi\|194447471\|ref\|YP_002044922.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar H... gi\|194472332, gi... - gi\|194472332\|ref\|ZP_03078316.1\| YbjP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM2... lcl\|NC_016856.1_... - [gene=ybjP] [protein=putative lipoprotein] [protein_id=YP_005236635.1] [location=complement(963053..... gi\|205343006, gi... - gi\|205343006\|gb\|EDZ29770.1\| YbjP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N0... gi\|194404551, gi... - gi\|194445888\|ref\|YP_002040130.1\| YbjP [Salmonella enterica subsp. enterica serovar Newport str. SL25... gi\|205347836, gi... - gi\|205347836\|gb\|EDZ34467.1\| YbjP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066],... gi\|168466510, gi... - gi\|195630886\|gb\|EDX49472.1\| YbjP [Salmonella enterica subsp. enterica serovar Newport str. SL317], g... gi\|238913409 - gi\|238913409\|ref\|ZP_04657246.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Te... gi\|168230799, gi... - gi\|205334745\|gb\|EDZ21509.1\| YbjP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191]... gi\|205340277, gi... - gi\|205340277\|gb\|EDZ27041.1\| YbjP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486]... gi\|205324477, gi... - gi\|205324477\|gb\|EDZ12316.1\| YbjP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29]... gi\|167992145, gi... - gi\|205329577\|gb\|EDZ16341.1\| YbjP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM2... gi\|161614843, gi... - gi\|161614843\|ref\|YP_001588808.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|62127087, gi\|... - gi\|62179454\|ref\|YP_215871.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Chole... gi\|16764253, gi\|... - gi\|16764253\|ref\|NP_459868.1\| putative lipoprotein [Salmonella typhimurium LT2], gi\|16419400\|gb\|AAL19... gi\|207856324, gi... - gi\|207856324\|ref\|YP_002242975.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|224582742, gi... - gi\|224582742\|ref\|YP_002636540.1\| probable lipoprotein [Salmonella enterica subsp. enterica serovar P...	324.0	[0..1]	[171..1]
gi\|218704292, gi... - gi\|218704292\|ref\|YP_002411811.1\| putative lipoprotein [Escherichia coli UMN026], gi\|218431389\|emb\|CA... gi\|74311409, gi\|... - gi\|74311409\|ref\|YP_309828.1\| putative lipoprotein [Shigella sonnei Ss046], gi\|73854886\|gb\|AAZ87593.1...	324.0	[0..1]	[171..1]
gi\|110614410, gi... - gi\|110804862\|ref\|YP_688382.1\| putative lipoprotein [Shigella flexneri 5 str. 8401], gi\|110614410\|gb\|... gi\|30040592, gi\|... - gi\|30062347\|ref\|NP_836518.1\| putative lipoprotein [Shigella flexneri 2a str. 2457T], gi\|30040592\|gb\|... gi\|56383299, gi\|... - gi\|56479748\|ref\|NP_706745.2\| putative lipoprotein [Shigella flexneri 2a str. 301], gi\|56383299\|gb\|AA...	322.0	[0..1]	[171..1]
gi\|208738025, gi... - gi\|208822540\|ref\|ZP_03262859.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|208731475, gi... - gi\|208814827\|ref\|ZP_03256006.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|25332875 - pir\|\|D90747 probable enzyme [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi\|208727224, gi... - gi\|208807423\|ref\|ZP_03249760.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|15830202, gi\|... - gi\|15830202\|ref\|NP_308975.1\| hypothetical protein ECs0948 [Escherichia coli O157:H7], gi\|13360407\|db... gi\|195936914 - gi\|195936914\|ref\|ZP_03082296.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4024] gi\|217325893, gi... - gi\|217325893\|ref\|ZP_03441977.1\| putative lipoprotein [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|209398500, gi... - gi\|209398500\|ref\|YP_002269538.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|15830202, gi\|... - gi\|15830202\|ref\|NP_308975.1\| putative lipoprotein [Escherichia coli O157:H7 str. Sakai], gi\|13360407... gi\|168763280, gi... - gi\|189366521\|gb\|EDU84937.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|16876328... gi\|168756664, gi... - gi\|189356281\|gb\|EDU74700.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|16875666... gi\|168750054, gi... - gi\|188015701\|gb\|EDU53823.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|16875005... gi\|189377787, gi... - gi\|189377787\|gb\|EDU96203.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|168799848... gi\|189002900, gi... - gi\|189002900\|gb\|EDU71886.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|16877942... gi\|187768239, gi... - gi\|187768239\|gb\|EDU32083.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|16877641... gi\|168767380, gi... - gi\|189363432\|gb\|EDU81851.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|16876738... gi\|254591464, gi... - gi\|254792064\|ref\|YP_003076901.1\| predicted lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|2...	322.0	[0..1]	[171..1]
gi\|15800620, gi\|... - gi\|15800620\|ref\|NP_286634.1\| putative lipoprotein [Escherichia coli O157:H7 EDL933], gi\|12513886\|gb\|... gi\|25332877 - pir\|\|H85597 probable enzyme ybjP [imported] - Escherichia coli (strain O157:H7, substrain EDL933)	320.0	[0..1]	[171..3]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYSKLTMLI PCALLLSACT TVTPAYKDNG TRSGPCVEGG PDNVAQQFYD YRILHRSNDI  60
   61 TALRPYLSDK LATLLSDASR DNNHRELLTN DPFSSRTTLP DSAHVASAST IPNRDARNIP 120
  121 LRVDLKQGDQ GWQDEVLMIQ EGQCWVIDDV RYLGGSVHAT AGTLRQSIEN R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits