YRC Public Data Repository - Protein Structure Prediction

Protein:	YBIV_ECOLI, SUPH...
Organism:	Escherichia coli
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBIV_ECOLI, SUPH....

Description	E-value	Query Range	Subject Range
gi\|145408869, gi... - gi\|82499630\|ref\|ZP_00885070.1\| ATPase, E1-E2 type:Copper ion-binding:Copper-translocating P-type ATP...	199.0	[0..2]	[268..500]
gi\|66780411, gi\|... - gi\|94972060\|ref\|YP_594100.1\| heavy metal translocating P-type ATPase [Deinococcus geothermalis DSM 1...	197.0	[0..2]	[270..500]
gi\|108759546, gi... - gi\|108759546\|ref\|YP_631612.1\| copper-translocating P-type ATPase [Myxococcus xanthus DK 1622], gi\|10...	196.0	[0..2]	[258..503]
gi\|76880917 - gi\|76880917\|gb\|ABA56087.1\| putative cation transport ATPase [Sinorhizobium meliloti]	196.0	[0..2]	[270..388]
ATCU_SINMW - Copper-transporting P-type ATPase OS=Sinorhizobium medicae (strain WSM419) GN=actP PE=1 SV=1 ATCU_RHIME - Copper-transporting P-type ATPase - Rhizobium meliloti (Sinorhizobium meliloti)	196.0	[0..4]	[268..510]
ATCU2_RHIME, ATC... - Copper-transporting ATPase 2 OS=Rhizobium meliloti GN=actP2 PE=3 SV=1, (P58342) Copper-transporting ... ATCU2_RHIME - Copper-transporting ATPase 2 OS=Rhizobium meliloti (strain 1021) GN=actP2 PE=3 SV=1	196.0	[0..4]	[268..510]
gi\|116255210, gi... - gi\|116255210\|ref\|YP_771043.1\| putative copper-transporting p-type ATPase [Rhizobium leguminosarum bv...	195.0	[0..2]	[268..523]
gi\|86284387, gi\|... - gi\|86360285\|ref\|YP_472173.1\| copper-transporting ATPase protein [Rhizobium etli CFN 42], gi\|86284387...	195.0	[0..2]	[268..522]
gi\|69276462, gi\|... - gi\|69276462\|ref\|ZP_00612056.1\| Copper-translocating P-type ATPase:Heavy metal translocating P-type A...	194.0	[0..2]	[268..527]

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Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVKVIVTDM DGTFLNDAKT YNQPRFMAQY QELKKRGIKF VVASGNQYYQ LISFFPELKD  60
   61 EISFVAENGA LVYEHGKQLF HGELTRHESR IVIGELLKDK QLNFVACGLQ SAYVSENAPE 120
  121 AFVALMAKHY HRLKPVKDYQ EIDDVLFKFS LNLPDEQIPL VIDKLHVALD GIMKPVTSGF 180
  181 GFIDLIIPGL HKANGISRLL KRWDLSPQNV VAIGDSGNDA EMLKMARYSF AMGNAAENIK 240
  241 QIARYATDDN NHEGALNVIQ AVLDNTSPFN S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	1rlmA
Description:	Crystal Structure of ybiV from Escherichia coli K12
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55296860681783	bayes_pls_golite062009
hydrolase activity	0.82377518695623	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: