YRC Public Data Repository - Protein Structure Prediction

Protein:	YBHR_ECOLI
Organism:	Escherichia coli
Length:	368 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBHR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|87290507, gi\|... - gi\|87306328\|ref\|ZP_01088475.1\| ABC transporter, ATP-binding protein [Blastopirellula marina DSM 3645...	239.0	[0..5]	[367..362]
gi\|89348866, gi\|... - gi\|89362287\|ref\|ZP_01200096.1\| ATPas [Xanthobacter autotrophicus Py2], gi\|89348866\|gb\|EAS14158.1\| AT...	237.0	[0..2]	[366..562]
gi\|95113215, gi\|... - gi\|95113215\|emb\|CAK17943.1\| ribosome-associated ATPase, ATP-binding domain (N-terminal) [Pseudomonas... gi\|95113215 - gi\|95113215\|emb\|CAK17943.1\| ribosome-associated ATPase, ATP-binding domain (N-terminal) [Pseudomonas...	235.0	[0..2]	[366..536]
gi\|115254147, gi... - gi\|116249499\|ref\|YP_765337.1\| putative transmembrane ABC transporter [Rhizobium leguminosarum bv. vi...	235.0	[0..4]	[366..537]
gi\|23348192, gi\|... - gi\|23502222\|ref\|NP_698349.1\| ABC transporter, ATP binding/permease protein [Brucella suis 1330], gi\|...	235.0	[0..2]	[366..551]
gi\|70733259, gi\|... - gi\|70733259\|ref\|YP_263032.1\| ABC transporter, ATP binding/permease protein [Pseudomonas fluorescens ...	234.0	[0..2]	[368..537]
gi\|26991883, gi\|... - gi\|26991883\|ref\|NP_747308.1\| ABC transporter permease/ATP-binding protein [Pseudomonas putida KT2440...	234.0	[0..2]	[366..535]
gi\|39997780, gi\|... - gi\|39997780\|ref\|NP_953731.1\| ABC transporter, ATP-binding protein [Geobacter sulfurreducens PCA], gi...	233.0	[0..2]	[366..559]
gi\|82716226, gi\|... - gi\|82736750\|ref\|ZP_00899606.1\| ATPas [Pseudomonas putida F1], gi\|82716226\|gb\|EAP51284.1\| ATPas [Pseu...	233.0	[0..2]	[366..535]
gi\|56695037, gi\|... - gi\|56695037\|ref\|YP_165384.1\| ABC transporter, ATP binding/permease protein [Ruegeria pomeroyi DSS-3]...	232.0	[0..2]	[366..537]

Back

Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHRLWTLIR KELQSLLREP QTRAILILPV LIQVILFPFA ATLEVTNATI AIYDEDNGEH  60
   61 SVELTQRFAR ASAFTHVLLL KSPQEIRPTI DTQKALLLVR FPADFSRKLD TF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [113-368]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTAPLQLILD GRNSNSAQIA ANYLQQIVKN YQQELLEGKP KPNNSELVVR NWYNPNLDYK  60
   61 WFVVPSLIAM ITTIGVMIVT SLSVAREREQ GTLDQLLVSP LTTWQIFIGK AVPALIVATF 120
  121 QATIVLAIGI WAYQIPFAGS LALFYFTMVI YGLSLVGFGL LISSLCSTQQ QAFIGVFVFM 180
  181 MPAILLSGYV SPVENMPVWL QNLTWINPIR HFTDITKQIY LKDASLDIVW NSLWPLLVIT 240
  241 ATTGSAAYAM FRRKVM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits