YRC Public Data Repository - Protein Structure Prediction

Protein:	YBHQ_ECOLI
Organism:	Escherichia coli
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBHQ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115512097, gi... - gi\|117622973\|ref\|YP_851886.1\| hypothetical protein APECO1_1299 [Escherichia coli APEC O1], gi\|115512... gi\|237707250, gi... - gi\|237707250\|ref\|ZP_04537731.1\| inner membrane protein ybhQ [Escherichia sp. 3_2_53FAA], gi\|22689846... gi\|218364465, gi... - gi\|218557696\|ref\|YP_002390609.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|91071397, gi\|... - gi\|91209823\|ref\|YP_539809.1\| hypothetical protein UTI89_C0792 [Escherichia coli UTI89], gi\|91071397\|...	195.0	[0..1]	[136..1]
gi\|81240284, gi\|... - gi\|82776136\|ref\|YP_402483.1\| hypothetical protein SDY_0812 [Shigella dysenteriae Sd197], gi\|81240284... gi\|218699163, gi... - gi\|218699163\|ref\|YP_002406792.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|170519867, gi... - gi\|170682149\|ref\|YP_001742894.1\| hypothetical protein EcSMS35_0815 [Escherichia coli SMS-3-5], gi\|17...	194.0	[0..1]	[136..1]
lcl\|NC_016856.1_... - [gene=ybhQ] [protein=putative inner membrane protein] [protein_id=YP_005236537.1] [location=880293..... gi\|16502028, gi\|... - gi\|25337298\|pir\|\|AC0599 probable membrane protein STY0849 [imported] - Salmonella enterica subsp. en... gi\|16759735 - gi\|16759735\|ref\|NP_455352.1\| hypothetical protein STY0849 [Salmonella enterica subsp. enterica serov... gi\|16764177, gi\|... - gi\|16764177\|ref\|NP_459792.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164193... gi\|29138123, gi\|... - gi\|29142492\|ref\|NP_805834.1\| hypothetical protein t2074 [Salmonella enterica subsp. enterica serovar... gi\|194455266, gi... - gi\|194468902\|ref\|ZP_03074886.1\| putative membrane protein [Salmonella enterica subsp. enterica serov... gi\|194448680, gi... - gi\|194448680\|ref\|YP_002044842.1\| hypothetical protein SeHA_C0941 [Salmonella enterica subsp. enteric... gi\|194445449, gi... - gi\|194445449\|ref\|YP_002040049.1\| hypothetical protein SNSL254_A0877 [Salmonella enterica subsp. ente... gi\|205343012, gi... - gi\|205343012\|gb\|EDZ29776.1\| putative membrane protein [Salmonella enterica subsp. enterica serovar W... gi\|197363009, gi... - gi\|197363009\|ref\|YP_002142646.1\| hypothetical protein SSPA1808 [Salmonella enterica subsp. enterica ... gi\|197262158, gi... - gi\|197262158\|ref\|ZP_03162232.1\| putative membrane protein [Salmonella enterica subsp. enterica serov... gi\|197248753, gi... - gi\|197248753\|ref\|YP_002145769.1\| hypothetical protein SeAg_B0849 [Salmonella enterica subsp. enteric... gi\|194710893, gi... - gi\|194735391\|ref\|YP_002113905.1\| hypothetical protein SeSA_A0962 [Salmonella enterica subsp. enteric... gi\|205334890, gi... - gi\|205334890\|gb\|EDZ21654.1\| putative membrane protein [Salmonella enterica subsp. enterica serovar K... gi\|167992046, gi... - gi\|205329646\|gb\|EDZ16410.1\| putative membrane protein [Salmonella enterica subsp. enterica serovar 4... gi\|205324657, gi... - gi\|205324657\|gb\|EDZ12496.1\| putative membrane protein [Salmonella enterica subsp. enterica serovar S... gi\|168466404, gi... - gi\|195630985\|gb\|EDX49571.1\| putative membrane protein [Salmonella enterica subsp. enterica serovar N... gi\|205347682, gi... - gi\|205347682\|gb\|EDZ34313.1\| putative membrane protein [Salmonella enterica subsp. enterica serovar H... gi\|168240678, gi... - gi\|205340010\|gb\|EDZ26774.1\| putative membrane protein [Salmonella enterica subsp. enterica serovar H... gi\|168236742, gi... - gi\|197290082\|gb\|EDY29439.1\| putative membrane protein [Salmonella enterica subsp. enterica serovar S... gi\|224467154, gi... - gi\|224582627\|ref\|YP_002636425.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|214000529 - gi\|214000529\|ref\|ZP_03411264.1\| hypothetical protein Salmonellentericaenterica_07846 [Salmonella ent... gi\|213855119 - gi\|213855119\|ref\|ZP_03383359.1\| hypothetical protein SentesT_13987 [Salmonella enterica subsp. enter... gi\|213647749 - gi\|213647749\|ref\|ZP_03377802.1\| hypothetical protein SentesTy_10967 [Salmonella enterica subsp. ente... gi\|62179381, gi\|... - gi\|62179381\|ref\|YP_215798.1\| hypothetical protein SC0811 [Salmonella enterica subsp. enterica serova... gi\|56128343, gi\|... - gi\|56414086\|ref\|YP_151161.1\| hypothetical protein SPA1939 [Salmonella enterica subsp. enterica serov... gi\|206708054, gi... - gi\|207856251\|ref\|YP_002242902.1\| hypothetical protein SEN0760 [Salmonella enterica subsp. enterica s... gi\|238913373 - gi\|238913373\|ref\|ZP_04657210.1\| hypothetical protein SentesTe_19911 [Salmonella enterica subsp. ente... gi\|205352072, gi... - gi\|205352072\|ref\|YP_002225873.1\| hypothetical protein SG0793 [Salmonella enterica subsp. enterica se... gi\|204929967, gi... - gi\|204929967\|ref\|ZP_03220988.1\| putative membrane protein [Salmonella enterica subsp. enterica serov... gi\|199602802, gi... - gi\|200390357\|ref\|ZP_03216968.1\| putative membrane protein [Salmonella enterica subsp. enterica serov... gi\|213619094 - gi\|213619094\|ref\|ZP_03372920.1\| hypothetical protein SentesTyp_22575 [Salmonella enterica subsp. ent... gi\|213586699 - gi\|213586699\|ref\|ZP_03368525.1\| hypothetical protein SentesTyph_37635 [Salmonella enterica subsp. en... gi\|213424790 - gi\|213424790\|ref\|ZP_03357540.1\| hypothetical protein SentesTyphi_03226 [Salmonella enterica subsp. e... gi\|213161218 - gi\|213161218\|ref\|ZP_03346928.1\| hypothetical protein Salmoneentericaenterica_14745 [Salmonella enter...	179.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWQQRVRVA TGLSCWQIML HLLVVALLVV GWMSKTLVHV GVGLCALYCV TVVMMLVFQR  60
   61 HPEQRWREVA DVLEELTTTW YFGAALIVLW LLSRVLENNF LLAIAGLAIL AGPAVVSLLA 120
  121 KDKKLHHLTS KHRVRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits