YRC Public Data Repository - Protein Structure Prediction

Protein:	YBGC_ECOLI
Organism:	Escherichia coli
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBGC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|28897830, gi\|... - gi\|28897830\|ref\|NP_797435.1\| hypothetical protein VP1056 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28806043 - gi\|28806043\|dbj\|BAC59319.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	134.0	[0..2]	[133..4]
gi\|59711564, gi\|... - gi\|59711564\|ref\|YP_204340.1\| acyl-CoA thioesterase [Vibrio fischeri ES114], gi\|59479665\|gb\|AAW85452....	132.0	[0..1]	[132..1]
gi\|37199211, gi\|... - gi\|37680463\|ref\|NP_935072.1\| hypothetical protein VV2279 [Vibrio vulnificus YJ016], gi\|37199211\|dbj\|...	131.0	[0..5]	[133..7]
gi\|75830162, gi\|... - gi\|75830162\|ref\|ZP_00759445.1\| COG0824: Predicted thioesterase [Vibrio cholerae MO10], gi\|254848926\|... gi\|121727648, gi... - gi\|75814779\|ref\|ZP_00745330.1\| COG0824: Predicted thioesterase [Vibrio cholerae V52], gi\|121727648\|r... gi\|227081969, gi... - gi\|227081969\|ref\|YP_002810520.1\| hypothetical protein VCM66_1763 [Vibrio cholerae M66-2], gi\|2270098... gi\|229511698, gi... - gi\|229511698\|ref\|ZP_04401177.1\| 4-hydroxybenzoyl-CoA thioesterase family active site protein [Vibrio... gi\|11354652 - pir\|\|D82152 conserved hypothetical protein VC1840 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|153828556, gi... - gi\|153828556\|ref\|ZP_01981223.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887595... gi\|153827557, gi... - gi\|153827557\|ref\|ZP_01980224.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149738470... gi\|121591343, gi... - gi\|121591343\|ref\|ZP_01678631.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215468... gi\|9656367, gi\|1... - gi\|9656367\|gb\|AAF94988.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|153820330, gi... - gi\|153820330\|ref\|ZP_01972997.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650...	131.0	[0..1]	[128..21]
gi\|85830877, gi\|... - gi\|86142845\|ref\|ZP_01061284.1\| putative thioesterase [Flavobacterium sp. MED217], gi\|85830877\|gb\|EAQ... gi\|85830877, gi\|... - gi\|86142845\|ref\|ZP_01061284.1\| putative thioesterase [Flavobacterium sp. MED217], gi\|85830877\|gb\|EAQ...	129.0	[0..10]	[134..8]
gi\|110735337 - gi\|110735337\|gb\|ABG89239.1\| hypothetical protein mh1646 [Mannheimia haemolytica]	129.0	[0..8]	[134..9]
gi\|86146489, gi\|... - gi\|86146489\|ref\|ZP_01064812.1\| hypothetical protein MED222_12778 [Vibrio sp. MED222], gi\|85835752\|gb...	128.0	[0..3]	[133..5]
gi\|71280811, gi\|... - gi\|71280811\|ref\|YP_268465.1\| hypothetical protein CPS_1727 [Colwellia psychrerythraea 34H], gi\|71146...	127.0	[0..3]	[134..11]
gi\|83849036, gi\|... - gi\|83857669\|ref\|ZP_00951197.1\| Predicted esterase [Croceibacter atlanticus HTCC2559], gi\|83849036\|gb...	127.0	[0..1]	[132..1]
gi\|146297770, gi... - gi\|90591877\|ref\|ZP_01247517.1\| 4-hydroxybenzoyl-CoA thioesterase [Flavobacterium johnsoniae UW101], ...	127.0	[0..6]	[133..4]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTTLFRWPV RVYYEDTDAG GVVYHASYVA FYERARTEML RHHHFSQQAL MAERVAFVVR  60
   61 KMTVEYYAPA RLDDMLEIQT EITSMRGTSL VFTQRIVNAE NTLLNEAEVL VVCVDPLKMK 120
  121 PRALPKSIVA EFKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.221849
Match:	1s5uA
Description:	Crystal Structure of Hypothetical Protein EC709 from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.66884012171138	bayes_pls_golite062009
thiolester hydrolase activity	0.78966333832473	bayes_pls_golite062009
catalytic activity	0.74605540351792	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.302743904610747	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: