YRC Public Data Repository - Protein Structure Prediction

Protein:	YBFO_ECOLI
Organism:	Escherichia coli
Length:	477 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBFO_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83585363, gi\|... - gi\|83585363\|ref\|ZP_00924010.1\| COG3209: Rhs family protein [Escherichia coli 101-1], gi\|194439260\|re...	392.0	[0..4]	[477..101]
gi\|188488813, gi... - gi\|75511592\|ref\|ZP_00734243.1\| COG3209: Rhs family protein [Escherichia coli 53638], gi\|188493614\|re...	386.0	[0..1]	[477..1]
gi\|157065862, gi... - gi\|75194864\|ref\|ZP_00704934.1\| COG3209: Rhs family protein [Escherichia coli HS], gi\|157160182\|ref\|Y...	386.0	[0..1]	[477..1]
gi\|75189726, gi\|... - gi\|75189726\|ref\|ZP_00702993.1\| COG3209: Rhs family protein [Escherichia coli E24377A], gi\|157156917\|...	383.0	[0..1]	[477..1]
gi\|192926837, gi... - gi\|75256414\|ref\|ZP_00728072.1\| COG3209: Rhs family protein [Escherichia coli E22], gi\|193065548\|ref\|...	383.0	[0..1]	[477..1]
gi\|194412879, gi... - gi\|75209727\|ref\|ZP_00709935.1\| COG3209: Rhs family protein [Escherichia coli B171], gi\|194429048\|ref...	381.0	[0..1]	[477..1]
gi\|75234516, gi\|... - gi\|75234516\|ref\|ZP_00718863.1\| COG3209: Rhs family protein [Escherichia coli E110019], gi\|193070642\|...	377.0	[0..1]	[477..923]
gi\|15829983, gi\|... - gi\|15829983\|ref\|NP_308756.1\| RhsC [Escherichia coli O157:H7 str. Sakai], gi\|13360187\|dbj\|BAB34152.1\|... gi\|239877828, gi... - pir\|\|A99720 RhsC core protein with extension [imported] - Escherichia coli (strain O157:H7, substrai... gi\|15829983, gi\|... - gi\|15829983\|ref\|NP_308756.1\| RhsC [Escherichia coli O157:H7], gi\|13360187\|dbj\|BAB34152.1\| RhsC core ... gi\|187767647, gi... - gi\|187767647\|gb\|EDU31491.1\| RHS repeat protein [Escherichia coli O157:H7 str. EC4196], gi\|168777025\|... gi\|217321712, gi... - gi\|217325491\|ref\|ZP_03441575.1\| RHS repeat protein [Escherichia coli O157:H7 str. TW14588], gi\|21732...	376.0	[0..1]	[477..923]
gi\|75229662 - gi\|75229662\|ref\|ZP_00716199.1\| COG3209: Rhs family protein [Escherichia coli B7A]	372.0	[0..1]	[477..923]
gi\|194431047, gi... - gi\|83571349\|ref\|ZP_00922789.1\| COG3209: Rhs family protein [Shigella dysenteriae 1012], gi\|194431047...	328.0	[0..1]	[437..923]

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Predicted Domain #1

Region A:
Residues: [1-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPDNRIARD AHYLYRYDRH GRLTEKTDLI PEGVIRTDDE RTHRYHYDSQ HRLVHYTRTQ  60
   61 YAEPLVESRY LYDPLGRRVA KRVWRRERDL TGWMSLSRKP QVTWYGWDGD RLTTIQNDRT 120
  121 RIQTIYQPGS FTPLIRVETA TGELAKTQRR SLADTLQQSG GEDGGSVVFP PVLVQMLDRL 180
  181 ESEILADRVS EESRRWLASC GLTVEQMQNQ MDPVYTPARK IHLYHCDHRG LPLALVSTEG 240
  241 ATEWCAEYDE WGNLLNEENP HQLQQLIRLP GQQYDEESGL YYNRHRYYDP LQGRYITQDP 300
  301 IGLKGGWNFY QYPLNPVQYI DSMGLASK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.91
Match:	2fkjA
Description:	No description for 2fkjA was found.

Predicted Domain #2

Region A:
Residues: [329-477]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGHLNNGGYG ARPNKPPTPD PSKLPDIAKQ LRLPYPIDQA SSAPNVFKTF FRALSPYDYT  60
   61 LYCRKWVKPN LTCTPQDDSQ YPGMDTKTAS DYLPQTNWPT TQLPPGYTCA EPYLFPDINK 120
  121 PDGPATAGID DLGEILAKMK QRTSRGIRK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits