YRC Public Data Repository - Protein Structure Prediction

Protein:	YBFN_ECOLI
Organism:	Escherichia coli
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBFN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77976357, gi\|... - gi\|77976357\|ref\|ZP_00831852.1\| hypothetical protein YintA_01003819 [Yersinia intermedia ATCC 29909],...	200.0	[0..1]	[108..1]
gi\|77956822, gi\|... - gi\|77956822\|ref\|ZP_00820899.1\| COG2367: Beta-lactamase class A [Yersinia bercovieri ATCC 43970], gi\|...	195.0	[0..1]	[107..1]
gi\|238790678, gi... - gi\|77973059\|ref\|ZP_00828612.1\| hypothetical protein YfreA_01003194 [Yersinia frederiksenii ATCC 3364...	195.0	[0..1]	[107..1]
gi\|157077608, gi... - gi\|75189710\|ref\|ZP_00702977.1\| hypothetical protein EcolE_01002999 [Escherichia coli E24377A], gi\|15... gi\|192954957, gi... - gi\|75214658\|ref\|ZP_00713175.1\| hypothetical protein EcolE1_01004677 [Escherichia coli E110019], gi\|1... gi\|187427701, gi... - gi\|75175175\|ref\|ZP_00695496.1\| hypothetical protein SboyB_01004671 [Shigella boydii BS512], gi\|18773... gi\|81244527, gi\|... - gi\|82543116\|ref\|YP_407063.1\| hypothetical protein SBO_0544 [Shigella boydii Sb227], gi\|81244527\|gb\|A...	192.0	[0..1]	[108..1]
gi\|110804681, gi... - gi\|110804681\|ref\|YP_688201.1\| hypothetical protein SFV_0649 [Shigella flexneri 5 str. 8401], gi\|1106...	191.0	[0..1]	[108..7]
gi\|13360171, gi\|... - gi\|15829967\|ref\|NP_308740.1\| hypothetical protein ECs0713 [Escherichia coli O157:H7], gi\|13360171\|db... gi\|253325388, gi... - gi\|254287538\|ref\|YP_003053286.1\| predicted lipoprotein [Escherichia coli BL21(DE3)], gi\|253976845\|gb... gi\|209776772, gi... - pir\|\|A90718 hypothetical protein ECs0713 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|251784172, gi... - gi\|251784172\|ref\|YP_002998476.1\| hypothetical protein B21_00630 [Escherichia coli BL21], gi\|24237644... gi\|12513584, gi\|... - gi\|15800385\|ref\|NP_286397.1\| hypothetical protein Z0830 [Escherichia coli O157:H7 EDL933], gi\|125135... gi\|188013594, gi... - gi\|188013594\|gb\|EDU51716.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|16875262... gi\|124529706, gi... - gi\|124529706\|ref\|ZP_01700613.1\| conserved hypothetical protein [Escherichia coli B], gi\|124499709\|gb... gi\|208809537, gi... - gi\|208809537\|ref\|ZP_03251874.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|194440129, gi... - gi\|83584544\|ref\|ZP_00923218.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Escherichia coli 10... gi\|208733075, gi... - gi\|208816427\|ref\|ZP_03257606.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|75511082, gi\|... - gi\|75511082\|ref\|ZP_00733814.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Escherichia coli 53... gi\|208737106, gi... - gi\|208822913\|ref\|ZP_03263231.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|56383252, gi\|... - gi\|56479701\|ref\|NP_706542.2\| hypothetical protein SF0611 [Shigella flexneri 2a str. 301], gi\|5638325... gi\|209397862, gi... - gi\|209397862\|ref\|YP_002269310.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|217324868, gi... - gi\|217324868\|ref\|ZP_03440952.1\| putative lipoprotein [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|218553215, gi... - gi\|218553215\|ref\|YP_002386128.1\| putative lipoprotein [Escherichia coli IAI1], gi\|218359983\|emb\|CAQ9... gi\|218426052, gi... - gi\|218688488\|ref\|YP_002396700.1\| putative lipoprotein [Escherichia coli ED1a], gi\|218426052\|emb\|CAR0... gi\|218694110, gi... - gi\|218694110\|ref\|YP_002401777.1\| putative lipoprotein [Escherichia coli 55989], gi\|218350842\|emb\|CAU... gi\|189355804, gi... - gi\|189355804\|gb\|EDU74223.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|16875713... gi\|168767122, gi... - gi\|189363568\|gb\|EDU81987.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|16876712... gi\|189002911, gi... - gi\|189002911\|gb\|EDU71897.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|16877916... gi\|168786526, gi... - gi\|189373514\|gb\|EDU91930.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC869], gi\|168786526... gi\|170020972, gi... - gi\|170020972\|ref\|YP_001725926.1\| hypothetical protein EcolC_2974 [Escherichia coli ATCC 8739], gi\|16... gi\|187776468, gi... - gi\|187776468\|ref\|ZP_02992964.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|1877... gi\|189404568, gi... - gi\|189404568\|ref\|ZP_03007508.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|1893... gi\|189406345, gi... - gi\|189406345\|ref\|ZP_03008161.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|18937... gi\|218431103, gi... - gi\|218704006\|ref\|YP_002411525.1\| putative lipoprotein [Escherichia coli UMN026], gi\|218431103\|emb\|CA... gi\|13360171, gi\|... - gi\|15829967\|ref\|NP_308740.1\| hypothetical protein ECs0713 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254591234, gi... - gi\|254791834\|ref\|YP_003076671.1\| predicted lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|2... gi\|253972651, gi... - gi\|254160750\|ref\|YP_003043858.1\| predicted lipoprotein [Escherichia coli B str. REL606], gi\|25397265...	190.0	[0..1]	[108..1]
gi\|74311210, gi\|... - gi\|74311210\|ref\|YP_309629.1\| hypothetical protein SSON_0636 [Shigella sonnei Ss046], gi\|73854687\|gb\|...	189.0	[0..1]	[108..1]
CHIQ_SALTY - Uncharacterized lipoprotein ChiQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=... gi\|197265696, gi... - gi\|197265696\|ref\|ZP_03165770.1\| YbfN [Salmonella enterica subsp. enterica serovar Saintpaul str. SAR... gi\|205328886, gi... - gi\|205328886\|gb\|EDZ15650.1\| YbfN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM2... lcl\|NC_016856.1_... - [gene=ybfN] [protein=putative lipoprotein] [protein_id=YP_005236403.1] [location=751487..751819]	189.0	[0..1]	[107..1]
gi\|30062143, gi\|... - gi\|30062143\|ref\|NP_836314.1\| hypothetical protein S0622 [Shigella flexneri 2a str. 2457T], gi\|300403...	188.0	[0..1]	[108..1]
gi\|168236675, gi... - gi\|197290299\|gb\|EDY29655.1\| YbfN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL... gi\|205334742, gi... - gi\|205334742\|gb\|EDZ21506.1\| YbfN [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191]... gi\|161615092, gi... - gi\|161615092\|ref\|YP_001589057.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|62179279, gi\|... - gi\|62179279\|ref\|YP_215696.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Chole... gi\|213053116 - gi\|213053116\|ref\|ZP_03345994.1\| YbfN [Salmonella enterica subsp. enterica serovar Typhi str. E00-786... gi\|213028119 - gi\|213028119\|ref\|ZP_03342566.1\| YbfN [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi\|204930443, gi... - gi\|204930443\|ref\|ZP_03221373.1\| YbfN [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM... gi\|197248157, gi... - gi\|197248157\|ref\|YP_002145660.1\| YbfN [Salmonella enterica subsp. enterica serovar Agona str. SL483]... gi\|213864779 - gi\|213864779\|ref\|ZP_03386898.1\| YbfN [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi\|213649593 - gi\|213649593\|ref\|ZP_03379646.1\| YbfN [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi\|213613312 - gi\|213613312\|ref\|ZP_03371138.1\| YbfN [Salmonella enterica subsp. enterica serovar Typhi str. E98-206... gi\|213428185 - gi\|213428185\|ref\|ZP_03360935.1\| YbfN [Salmonella enterica subsp. enterica serovar Typhi str. E02-118... gi\|168820191, gi... - gi\|205343004\|gb\|EDZ29768.1\| YbfN [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N0... gi\|168467763, gi... - gi\|195629211\|gb\|EDX48579.1\| YbfN [Salmonella enterica subsp. enterica serovar Newport str. SL317], g... gi\|168264380, gi... - gi\|205347100\|gb\|EDZ33731.1\| YbfN [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066],... gi\|205339748, gi... - gi\|205339748\|gb\|EDZ26512.1\| YbfN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486]... gi\|16759632 - gi\|16759632\|ref\|NP_455249.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|194710219, gi... - gi\|194734717\|ref\|YP_002113794.1\| YbfN [Salmonella enterica subsp. enterica serovar Schwarzengrund st... gi\|194457577, gi... - gi\|194471213\|ref\|ZP_03077197.1\| YbfN [Salmonella enterica subsp. enterica serovar Kentucky str. CVM2... gi\|25372972, gi\|... - gi\|25372972\|pir\|\|AE0585 probable lipoprotein STY0726 [imported] - Salmonella enterica subsp. enteric... gi\|194408980, gi... - gi\|194450676\|ref\|YP_002044718.1\| YbfN [Salmonella enterica subsp. enterica serovar Heidelberg str. S... gi\|29142595, gi\|... - gi\|29142595\|ref\|NP_805937.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|194442252, gi... - gi\|194442252\|ref\|YP_002039925.1\| YbfN [Salmonella enterica subsp. enterica serovar Newport str. SL25... gi\|224582515, gi... - gi\|224582515\|ref\|YP_002636313.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|214000967 - gi\|214000967\|ref\|ZP_03411702.1\| YbfN [Salmonella enterica subsp. enterica serovar Typhi str. E98-313...	188.0	[0..1]	[107..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLILIAIM ASGLVACAQS TAPQEDSRLK EAYSACINTA QGSPEKIEAC QSVLNVLKKE  60
   61 KQHQQFADQE SVRVLDYQQC LRATQTGNDQ AVKADCDKVW QEIRSNNK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.936	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits