YRC Public Data Repository - Protein Structure Prediction

Protein:	YBFF_ECOLI
Organism:	Escherichia coli
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBFF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|214034777, gi... - gi\|254479271\|ref\|ZP_05092613.1\| hydrolase, alpha/beta fold family, putative [Carboxydibrachium pacif... gi\|20515541, gi\|... - gi\|20807053\|ref\|NP_622224.1\| alpha/beta superfamily hydrolase/acyltransferase [Thermoanaerobacter te... gi\|20807053 - gi\|20807053\|ref\|NP_622224.1\| predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamil...	187.0	[0..1]	[252..4]
tr\|Q87XT7\|Q87XT7... - Hydrolase, alpha/beta fold family OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4089 P... gi\|213971418, gi... - gi\|213971418\|ref\|ZP_03399532.1\| hydrolase, alpha/beta fold family [Pseudomonas syringae pv. tomato T... gi\|28871231, gi\|... - gi\|28871231\|ref\|NP_793850.1\| alpha/beta fold family hydrolase [Pseudomonas syringae pv. tomato str. ...	184.0	[0..8]	[252..11]
gi\|92393765, gi\|... - gi\|93006087\|ref\|YP_580524.1\| 3-oxoadipate enol-lactonase [Psychrobacter cryohalolentis K5], gi\|92393...	183.0	[0..1]	[253..10]
gi\|89085007, gi\|... - gi\|89100269\|ref\|ZP_01173135.1\| hydrolase, alpha/beta fold family protein [Bacillus sp. NRRL B-14911]...	183.0	[0..1]	[252..9]
gi\|25533254 - pir\|\|AF2333 hypothetical protein all4221 [imported] - Nostoc sp. (strain PCC 7120) gi\|17231713, gi\|... - gi\|17231713\|ref\|NP_488261.1\| hypothetical protein all4221 [Nostoc sp. PCC 7120], gi\|17133356\|dbj\|BAB...	182.0	[0..1]	[252..13]
gi\|23126418, gi\|... - gi\|23126418\|ref\|ZP_00108314.1\| COG0596: Predicted hydrolases or acyltransferases (alpha/beta hydrola...	181.0	[0..1]	[252..13]
gi\|70728921, gi\|... - gi\|70728921\|ref\|YP_258670.1\| alpha/beta fold family hydrolase [Pseudomonas fluorescens Pf-5], gi\|683...	180.0	[0..5]	[252..8]
gi\|113942110, gi... - gi\|159900119\|ref\|YP_001546366.1\| alpha/beta hydrolase fold [Herpetosiphon aurantiacus ATCC 23779], g...	180.0	[0..1]	[253..4]
gi\|75906908, gi\|... - gi\|75906908\|ref\|YP_321204.1\| Alpha/beta hydrolase fold [Anabaena variabilis ATCC 29413], gi\|75700633...	179.0	[0..4]	[252..16]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNIRAQTA QNQHNNSPIV LVHGLFGSLD NLGVLARDLV NDHNIIQVDM RNHGLSPRDP  60
   61 VMNYPAMAQD LVDTLDAQQI DKATFIGHSM GGKAVMALTA LASDRIDKLV AIDIAPVDYH 120
  121 VRRHDEIFAA INAVSESDAQ TRQQAAAIMR QHLNEEGVIQ FLLKSFVDGE WRFNVPVLWD 180
  181 QYPHIVGWEK IPAWDHPALF IPGGNSPYVS EQYRDDLLAQ FPQARAHVIA GAGHWVHAEK 240
  241 PDAVLRAIRR YLND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	2d0dA
Description:	No description for 2d0dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits