YRC Public Data Repository - Protein Structure Prediction

Protein:	YBFA_ECOLI
Organism:	Escherichia coli
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBFA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|22125167, gi\|... - gi\|22125167\|ref\|NP_668590.1\| hypothetical protein y1267 [Yersinia pestis KIM], gi\|21958029\|gb\|AAM848... gi\|45437143, gi\|... - gi\|45442279\|ref\|NP_993818.1\| hypothetical protein YP_2496 [Yersinia pestis biovar Microtus str. 9100...	121.0	[0..1]	[68..27]
gi\|77978026 - gi\|77978026\|ref\|ZP_00833461.1\| hypothetical protein YintA_01002169 [Yersinia intermedia ATCC 29909]	118.0	[0..1]	[68..1]
gi\|16764078, gi\|... - gi\|16764078\|ref\|NP_459693.1\| putative periplasmic protein [Salmonella typhimurium LT2], gi\|16419216\|... gi\|168820167, gi... - gi\|205343190\|gb\|EDZ29954.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|194402536, gi... - gi\|194443873\|ref\|YP_002039946.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|197288308, gi... - gi\|197288308\|gb\|EDY27689.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205347171, gi... - gi\|205347171\|gb\|EDZ33802.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|161364433, gi... - gi\|161615069\|ref\|YP_001589034.1\| hypothetical protein SPAB_02829 [Salmonella enterica subsp. enteric... gi\|167992981, gi... - gi\|205328913\|gb\|EDZ15677.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=ybfA] [protein=hypothetical protein] [protein_id=YP_005236427.1] [location=774958..775164] gi\|197261984, gi... - gi\|197261984\|ref\|ZP_03162058.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|204930010, gi... - gi\|204930010\|ref\|ZP_03221031.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|194713771, gi... - gi\|194738269\|ref\|YP_002113815.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|197251470, gi... - gi\|197251470\|ref\|YP_002145680.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s...	117.0	[0..1]	[68..1]
gi\|29138208, gi\|... - gi\|29142577\|ref\|NP_805919.1\| hypothetical protein t2168 [Salmonella enterica subsp. enterica serovar... gi\|16759650 - gi\|16759650\|ref\|NP_455267.1\| hypothetical protein STY0748 [Salmonella enterica subsp. enterica serov... gi\|56414172, gi\|... - gi\|56414172\|ref\|YP_151247.1\| hypothetical protein SPA2033 [Salmonella enterica subsp. enterica serov... gi\|224582536, gi... - gi\|224582536\|ref\|YP_002636334.1\| hypothetical protein SPC_0718 [Salmonella enterica subsp. enterica ... gi\|25513115, gi\|... - gi\|25513115\|pir\|\|AH0587 probable exported protein STY0748 [imported] - Salmonella enterica subsp. en... gi\|214001601 - gi\|214001601\|ref\|ZP_03412336.1\| hypothetical protein Salmonellentericaenterica_14532 [Salmonella ent... gi\|213418637 - gi\|213418637\|ref\|ZP_03351703.1\| hypothetical protein Salmonentericaenterica_12487 [Salmonella enteri... gi\|213163181 - gi\|213163181\|ref\|ZP_03348891.1\| hypothetical protein Salmoneentericaenterica_25403 [Salmonella enter... gi\|213022876 - gi\|213022876\|ref\|ZP_03337323.1\| hypothetical protein Salmonelentericaenterica_09758 [Salmonella ente... gi\|206707968, gi... - gi\|207856165\|ref\|YP_002242816.1\| hypothetical protein SEN0671 [Salmonella enterica subsp. enterica s... gi\|213865097 - gi\|213865097\|ref\|ZP_03387216.1\| hypothetical protein SentesT_35241 [Salmonella enterica subsp. enter... gi\|213647829 - gi\|213647829\|ref\|ZP_03377882.1\| hypothetical protein SentesTy_11429 [Salmonella enterica subsp. ente... gi\|213584006 - gi\|213584006\|ref\|ZP_03365832.1\| hypothetical protein SentesTyph_23410 [Salmonella enterica subsp. en... gi\|213428166 - gi\|213428166\|ref\|ZP_03360916.1\| hypothetical protein SentesTyphi_22880 [Salmonella enterica subsp. e... gi\|194472687, gi... - gi\|194472687\|ref\|ZP_03078671.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|195629231, gi... - gi\|195629231\|gb\|EDX48599.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168230598, gi... - gi\|205334759\|gb\|EDZ21523.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167552877, gi... - gi\|205322553\|gb\|EDZ10392.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205271766, gi... - gi\|205351985\|ref\|YP_002225786.1\| hypothetical protein SG0704 [Salmonella enterica subsp. enterica se... gi\|200390541, gi... - gi\|200390541\|ref\|ZP_03217152.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|198245007, gi... - gi\|198245007\|ref\|YP_002214690.1\| hypothetical protein SeD_A0816 [Salmonella enterica subsp. enterica... gi\|197363095, gi... - gi\|197363095\|ref\|YP_002142732.1\| hypothetical protein SSPA1894 [Salmonella enterica subsp. enterica ...	116.0	[0..1]	[68..1]
gi\|227838411, gi... - gi\|227884325\|ref\|ZP_04002130.1\| periplasmic protein [Escherichia coli 83972], gi\|227838411\|gb\|EEJ488... gi\|218688503, gi... - gi\|218688503\|ref\|YP_002396715.1\| hypothetical protein ECED1_0678 [Escherichia coli ED1a], gi\|2184260... gi\|26246675, gi\|... - gi\|26246675\|ref\|NP_752715.1\| hypothetical protein c0785 [Escherichia coli CFT073], gi\|26107074\|gb\|AA... gi\|215263801, gi... - gi\|215485729\|ref\|YP_002328160.1\| hypothetical protein E2348C_0589 [Escherichia coli O127:H6 str. E23... gi\|218557626, gi... - gi\|218557626\|ref\|YP_002390539.1\| hypothetical protein ECS88_0734 [Escherichia coli S88], gi\|21836439... gi\|226898540, gi... - gi\|237707330\|ref\|ZP_04537811.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|91209742, gi\|... - gi\|91209742\|ref\|YP_539728.1\| hypothetical protein UTI89_C0704 [Escherichia coli UTI89], gi\|91071316\|...	116.0	[0..1]	[68..1]
gi\|77956270 - gi\|77956270\|ref\|ZP_00820386.1\| hypothetical protein YberA_01003466 [Yersinia bercovieri ATCC 43970]	114.0	[0..3]	[68..1]
gi\|110342508, gi... - gi\|110640916\|ref\|YP_668644.1\| hypothetical protein ECP_0719 [Escherichia coli 536], gi\|110342508\|gb\|... gi\|190905668, gi... - gi\|75237372\|ref\|ZP_00721414.1\| hypothetical protein EcolF_01003926 [Escherichia coli F11], gi\|191174...	114.0	[0..1]	[68..1]
gi\|152960803, gi... - gi\|153949308\|ref\|YP_001400090.1\| hypothetical protein YpsIP31758_1109 [Yersinia pseudotuberculosis I... gi\|149291827, gi... - gi\|149365414\|ref\|ZP_01887449.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149291827\|... gi\|145598862, gi... - gi\|145598862\|ref\|YP_001162938.1\| hypothetical protein YPDSF_1578 [Yersinia pestis Pestoides F], gi\|1... gi\|229681520, gi... - gi\|229901591\|ref\|ZP_04516713.1\| hypothetical protein YP516_1291 [Yersinia pestis Nepal516], gi\|22968... gi\|108808418, gi... - gi\|108808418\|ref\|YP_652334.1\| hypothetical protein YPA_2424 [Yersinia pestis Antiqua], gi\|108780331\|... gi\|229694619, gi... - gi\|229838253\|ref\|ZP_04458412.1\| hypothetical protein YPH_0485 [Yersinia pestis biovar Orientalis str... gi\|51590513, gi\|... - gi\|51597231\|ref\|YP_071422.1\| hypothetical protein YPTB2915 [Yersinia pseudotuberculosis IP 32953], g... gi\|167057565, gi... - gi\|167423395\|ref\|ZP_02315148.1\| putative membrane protein [Yersinia pestis biovar Mediaevalis str. K... gi\|25510865 - pir\|\|AE0328 probable membrane protein YPO2693 [imported] - Yersinia pestis (strain CO92) gi\|169749940, gi... - gi\|170023406\|ref\|YP_001719911.1\| hypothetical protein YPK_1160 [Yersinia pseudotuberculosis YPIII], ... gi\|186896332, gi... - gi\|186896332\|ref\|YP_001873444.1\| membrane protein [Yersinia pseudotuberculosis PB1/+], gi\|186699358\|... gi\|229701359, gi... - gi\|229895553\|ref\|ZP_04510724.1\| hypothetical protein YPS_3345 [Yersinia pestis Pestoides A], gi\|2297... gi\|15980672, gi\|... - gi\|218929766\|ref\|YP_002347641.1\| hypothetical protein YPO2693 [Yersinia pestis CO92], gi\|16122898\|re... gi\|229688365, gi... - gi\|229898817\|ref\|ZP_04513962.1\| hypothetical protein YPF_3258 [Yersinia pestis biovar Orientalis str... gi\|165925320, gi... - gi\|165925320\|ref\|ZP_02221152.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. F1... gi\|165937202, gi... - gi\|165937202\|ref\|ZP_02225767.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. IP... Q667S6\|Q667S6_YERPS - Putative membrane protein - Yersinia pseudotuberculosis gi\|167051601, gi... - gi\|167399097\|ref\|ZP_02304621.1\| putative membrane protein [Yersinia pestis biovar Antiqua str. UG05-... gi\|166960859, gi... - gi\|167421370\|ref\|ZP_02313123.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. MG...	114.0	[0..1]	[68..1]
gi\|49610809, gi\|... - gi\|50120283\|ref\|YP_049450.1\| hypothetical protein ECA1344 [Pectobacterium atrosepticum SCRI1043], gi...	114.0	[0..1]	[68..1]
gi\|238797758, gi... - gi\|77961531\|ref\|ZP_00825366.1\| hypothetical protein YmolA_01002208 [Yersinia mollaretii ATCC 43969],...	114.0	[0..3]	[68..1]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELYREYPAW LIFLRRTYAV AAGVLALPFM LFWKDRARFY SYLHRVWSKT SDKPVWMDQA  60
   61 EKATGDFY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits