YRC Public Data Repository - Protein Structure Prediction

Protein:	YBEV_ECOLI
Organism:	Escherichia coli
Length:	483 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBEV_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|192930976, gi... - gi\|75258615\|ref\|ZP_00730022.1\| hypothetical protein EcolE2_01001561 [Escherichia coli E22], gi\|19306... gi\|193069054, gi... - gi\|75236630\|ref\|ZP_00720718.1\| hypothetical protein EcolE1_01002138 [Escherichia coli E110019], gi\|1... gi\|75209038, gi\|... - gi\|75209038\|ref\|ZP_00709298.1\| hypothetical protein EcolB_01003785 [Escherichia coli B171], gi\|19442... gi\|218553191, gi... - gi\|218553191\|ref\|YP_002386104.1\| Hsc56 co-chaperone of HscC [Escherichia coli IAI1], gi\|218359959\|em...	600.0	[0..1]	[483..1]
gi\|75189687, gi\|... - gi\|75189687\|ref\|ZP_00702954.1\| hypothetical protein EcolE_01002975 [Escherichia coli E24377A], gi\|15...	599.0	[0..1]	[483..1]
gi\|73854662, gi\|... - gi\|74311185\|ref\|YP_309604.1\| hypothetical protein SSON_0603 [Shigella sonnei Ss046], gi\|73854662\|gb\|...	596.0	[0..1]	[483..1]
gi\|30062162, gi\|... - gi\|30062162\|ref\|NP_836333.1\| hypothetical protein S0654 [Shigella flexneri 2a str. 2457T], gi\|300404... gi\|24050875, gi\|... - gi\|24112051\|ref\|NP_706561.1\| hypothetical protein SF0632 [Shigella flexneri 2a str. 301], gi\|2405087... gi\|110804702, gi... - gi\|110804702\|ref\|YP_688222.1\| hypothetical protein SFV_0677 [Shigella flexneri 5 str. 8401], gi\|1106...	594.0	[0..1]	[483..1]
gi\|187427775, gi... - gi\|75175884\|ref\|ZP_00696071.1\| hypothetical protein SboyB_01004045 [Shigella boydii BS512], gi\|18773...	594.0	[0..1]	[483..1]
gi\|190901287, gi... - gi\|75228106\|ref\|ZP_00714777.1\| hypothetical protein EcolB7_01003553 [Escherichia coli B7A], gi\|19116...	591.0	[0..1]	[483..1]
gi\|194434452, gi... - gi\|83569106\|ref\|ZP_00920566.1\| hypothetical protein Sdys1_01002631 [Shigella dysenteriae 1012], gi\|1...	577.0	[0..1]	[483..1]
gi\|254287515, gi... - gi\|254287515\|ref\|YP_003053263.1\| Hsc56 co-chaperone of HscC [Escherichia coli BL21(DE3)], gi\|2539768... gi\|253972628, gi... - gi\|254160727\|ref\|YP_003043835.1\| Hsc56 co-chaperone of HscC [Escherichia coli B str. REL606], gi\|253... gi\|83584755 - gi\|83584755\|ref\|ZP_00923418.1\| hypothetical protein Ecol1_01004036 [Escherichia coli 101-1]	541.0	[0..105]	[483..1]
lcl\|NC_016856.1_... - [gene=ybeS] [protein=putative molecular chaperone] [protein_id=YP_005236372.1] [location=719398..720... gi\|167990665, gi... - gi\|205330969\|gb\|EDZ17733.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar 4,[5],1... gi\|16764033, gi\|... - gi\|16764033\|ref\|NP_459648.1\| putative molecular chaperone [Salmonella typhimurium LT2], gi\|16419169\|... gi\|197265628, gi... - gi\|197265628\|ref\|ZP_03165702.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Sai... gi\|167550807, gi... - gi\|205324296\|gb\|EDZ12135.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Saintpa...	531.0	[0..1]	[480..1]
gi\|62179255, gi\|... - gi\|62179255\|ref\|YP_215672.1\| DnaJ family molecular chaperone [Salmonella enterica subsp. enterica se...	520.0	[0..1]	[480..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTCWQILEI ESTTQIDIIR QAYLARLPLC HPETDPQGFK ALRQAYEEAL RLAVNPVEEA  60
   61 DDEEKDAAAE HEILRAFRTL LDSESDRFQP SAWQKFIQQL NTWNME

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1xblA
Description:	NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [107-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVDQLRWPLC AIAIEARYLS LNCASLLAER LNWHSFNDSE GMDEEEREAF LEAIQAGDCF  60
   61 DFLSLLEYPI ALQNQTVEYY FALERCCRYH PDYVTAFLAM EGPWLIPDDA KLHRKLLRWY 120
  121 SSVQTGMAEL IPVAQQWQTE EPESEDARYY LCAQRLYCGE GESLLADLCA YWESYPSTQA 180
  181 DNLLLQWSKR HCPDYFALLV MVIEARSMVD AQGQPLKYVP GESARTRLLW AEILHSGKLS 240
  241 PLGQSFIESL FFKRKAWAWW KSRVGSETEQ DSPFLDLYRV AEQVV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [392-483]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEAFPKQEML ARLNTRLEGG DAHPLEAIVT RMLLTKVKLE PEDEDVDEPT PENHEEKNDE  60
   61 GEKPQSITSI IKISLTVLVI GYALGKIAML FS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits