YRC Public Data Repository - Protein Structure Prediction

Protein:	YBES_ECOLI
Organism:	Escherichia coli
Length:	475 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBES_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75511291, gi\|... - gi\|75511291\|ref\|ZP_00733985.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom...	528.0	[0..1]	[475..1]
gi\|12513551, gi\|... - gi\|15800361\|ref\|NP_286373.1\| putative enzyme of polynucleotide modification [Escherichia coli O157:H... gi\|13360142, gi\|... - gi\|15829938\|ref\|NP_308711.1\| hypothetical protein of polynucleotide modification [Escherichia coli O... gi\|208814988, gi... - gi\|208814988\|ref\|ZP_03256167.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|208737351, gi... - gi\|208823158\|ref\|ZP_03263476.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4042], gi\|20873... gi\|209157684, gi... - gi\|209396284\|ref\|YP_002269281.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4115], gi\|2091... gi\|217322286, gi... - gi\|217326065\|ref\|ZP_03442149.1\| DnaJ domain protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|189373549, gi... - gi\|189373549\|gb\|EDU91965.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC869], gi\|168786496\|... gi\|254591211, gi... - gi\|254791811\|ref\|YP_003076648.1\| predicted chaperone [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|189375572, gi... - gi\|189375572\|gb\|EDU93988.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC508], gi\|168802443\|... gi\|195939385 - gi\|195939385\|ref\|ZP_03084767.1\| hypothetical protein EscherichcoliO157_23699 [Escherichia coli O157:... gi\|208726518, gi... - gi\|208806717\|ref\|ZP_03249054.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|168764676, gi... - gi\|189365374\|gb\|EDU83790.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4501], gi\|168764676... gi\|168767093, gi... - gi\|189363528\|gb\|EDU81947.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4486], gi\|168767093... gi\|13360142, gi\|... - gi\|15829938\|ref\|NP_308711.1\| hypothetical protein ECs0684 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168777612, gi... - gi\|187767189\|gb\|EDU31033.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4196], gi\|168777612... gi\|189002874, gi... - gi\|189002874\|gb\|EDU71860.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4076], gi\|168779138... gi\|168752217, gi... - gi\|188013887\|gb\|EDU52009.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4113], gi\|168752217... gi\|168758290, gi... - gi\|189354842\|gb\|EDU73261.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4401], gi\|168758290... gi\|209777016, gi... - pir\|\|A85565 probable enzyme of polynucleotide modification ybeS [imported] - Escherichia coli (strai...	522.0	[0..1]	[475..1]
EG13652 - J domain-containing HscC co-chaperone; Hsc56 / HscC co-chaperone, J domain-containing; tail-anchored... gi\|188487272, gi... - gi\|75511294\|ref\|ZP_00733988.1\| hypothetical protein Ecol5_01004394 [Escherichia coli 53638], gi\|1884... gi\|170020994, gi... - gi\|170020994\|ref\|YP_001725948.1\| heat shock protein DnaJ domain-containing protein [Escherichia coli... gi\|170080329, gi... - gi\|170080329\|ref\|YP_001729649.1\| Hsc56 co-chaperone of HscC [Escherichia coli str. K-12 substr. DH10... gi\|124499687, gi... - gi\|124529684\|ref\|ZP_01700591.1\| heat shock protein DnaJ domain protein [Escherichia coli B], gi\|1244... gi\|4062264, gi\|8... - gi\|89107518\|ref\|AP_001298.1\| Hsc56 co-chaperone of HscC [Escherichia coli str. K-12 substr. W3110], ... YBEV_ECOLI - Hypothetical J domain-containing protein ybeV - Escherichia coli gi\|238861434, gi... - gi\|238899926\|ref\|YP_002925722.1\| Hsc56 co-chaperone of HscC [Escherichia coli BW2952], gi\|238861434\|... EG13652 - J domain-containing HscC co-chaperone; Hsc56 / HscC co-chaperone, J domain-containing; tail-anchored...	522.0	[0..1]	[474..1]
gi\|75189684, gi\|... - gi\|75189684\|ref\|ZP_00702951.1\| COG2214: DnaJ-class molecular chaperone [Escherichia coli E24377A], g...	520.0	[0..1]	[475..1]
gi\|75228103, gi\|... - gi\|75228103\|ref\|ZP_00714774.1\| COG2214: DnaJ-class molecular chaperone [Escherichia coli B7A], gi\|19...	520.0	[0..1]	[475..1]
gi\|75236627, gi\|... - gi\|75236627\|ref\|ZP_00720715.1\| COG2214: DnaJ-class molecular chaperone [Escherichia coli E110019], g... gi\|218694086, gi... - gi\|218694086\|ref\|YP_002401753.1\| putative DnaJ-class chaperone [Escherichia coli 55989], gi\|21835081...	520.0	[0..1]	[475..1]
gi\|82543091, gi\|... - gi\|82543091\|ref\|YP_407038.1\| putative enzyme of polynucleotide modification [Shigella boydii Sb227],...	519.0	[0..1]	[475..1]
gi\|73854662, gi\|... - gi\|74311185\|ref\|YP_309604.1\| hypothetical protein SSON_0603 [Shigella sonnei Ss046], gi\|73854662\|gb\|...	518.0	[0..1]	[474..1]
gi\|194429732, gi... - gi\|75209041\|ref\|ZP_00709301.1\| COG2214: DnaJ-class molecular chaperone [Escherichia coli B171], gi\|1... gi\|209917906, gi... - gi\|209917906\|ref\|YP_002291990.1\| hypothetical protein ECSE_0715 [Escherichia coli SE11], gi\|20991116... gi\|193063346, gi... - gi\|75258618\|ref\|ZP_00730025.1\| COG2214: DnaJ-class molecular chaperone [Escherichia coli E22], gi\|19...	517.0	[0..1]	[475..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNCWKILDI EETTDVDIIR RAYLALLPSF HPETDPQGFK QLRQAYEEAL RIAQSPAKSV  60
   61 WQPEEYEVAE HEILLAFRAL LASDSERFLP SAWQRFIQQL NYCSMEEIDE LRWSLCTIAM 120
  121 NTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	1xblA
Description:	NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [124-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HLSFECVVLL AERLRWLQEE NTGEIDEEEL ESFLYAIAKG NVFNFQTILH LPVAVQNDTI  60
   61 DFYQMFARIW SSHPQWLTLY LAQHRAVIIP DDAKLHRNLL RWYSAGRLDI PELLDYAQSW 120
  121 RETEPDNEDA PYYEYAQRVY CGEGESLLAE LCDYWREYPS TQADALMLQW CRQHRVDYYP 180
  181 LLVMMIEARD LVNDQGKPLL YVPGDSARTR FHLYEILSDE KLSALGRSLV EMVLHKGRKP 240
  241 RISLTRDTEH TLWPLYLVAK QLVQAC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [390-475]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPTEESLMPI VSRLDAENRC PLEALIIRRL LIQAANFTEK QTVEPEPQPQ PMPVDDGGPG  60
   61 CLGIIKIIFY IFIFAGLIGK ILHLFG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits