YRC Public Data Repository - Protein Structure Prediction

Protein:	YBED_ECOLI
Organism:	Escherichia coli
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBED_ECOLI.

Description	E-value	Query Range	Subject Range
Y794_SODGM - UPF0250 protein SG0794 OS=Sodalis glossinidius (strain morsitans) GN=SG0794 PE=3 SV=1	138.0	[0..1]	[87..1]
gi\|238790456, gi... - gi\|77973027\|ref\|ZP_00828580.1\| COG2921: Uncharacterized conserved protein [Yersinia frederiksenii AT...	137.0	[0..1]	[87..1]
gi\|58176674 - gi\|58176674\|pdb\|1RWU\|A Chain A, Solution Structure Of Conserved Protein Ybed From E. Coli	137.0	[0..1]	[87..23]
Y1293_PHOLL, YC9... - (Q7N765) Hypothetical UPF0250 protein plu1293, UPF0250 protein plu1293 OS=Photorhabdus luminescens s... Y1293_PHOLL - UPF0250 protein plu1293 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ...	135.0	[0..1]	[87..1]
gi\|229700860, gi... - gi\|229895937\|ref\|ZP_04511107.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229700860\|gb\|EEO... gi\|229688291, gi... - gi\|229898743\|ref\|ZP_04513888.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|166008480, gi... - gi\|166008480\|ref\|ZP_02229378.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165925337, gi... - gi\|165925337\|ref\|ZP_02221169.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y1853_YERPG - UPF0250 protein YpAngola_A1853 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A1853 PE=3... Y2499_YERPA - UPF0250 protein YPA_2499 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_2499 PE=3 SV=1 Y2953_YERP3 - UPF0250 protein YpsIP31758_2953 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... Y1085_YERPN - UPF0250 protein YPN_1085 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_1085 PE=3 SV=1 gi\|149365499, gi... - gi\|149365499\|ref\|ZP_01887534.1\| hypothetical protein YPE_0664 [Yersinia pestis CA88-4125], gi\|149291... Y2653_YERPP - UPF0250 protein YPDSF_2653 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_2653 PE=3 SV=1 Y2600_YERPE - UPF0250 protein YPO2600/y1174/YP_1113 OS=Yersinia pestis GN=YPO2600 PE=3 SV=1 gi\|89102291, gi\|... - gi\|89102291\|ref\|ZP_01174936.1\| COG2921: Uncharacterized conserved protein [Yersinia pestis biovar Or... gi\|45435802, gi\|... - gi\|45440943\|ref\|NP_992482.1\| hypothetical protein YP_1113 [Yersinia pestis biovar Microtus str. 9100... gi\|22125077, gi\|... - gi\|22125077\|ref\|NP_668500.1\| hypothetical protein y1174 [Yersinia pestis KIM], gi\|21957930\|gb\|AAM847... gi\|16122813, gi\|... - gi\|218929681\|ref\|YP_002347556.1\| hypothetical protein YPO2600 [Yersinia pestis CO92], gi\|16122813\|re... Y1093_YERPS - UPF0250 protein YPTB1093 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB1093 PE=3... Y1093_YERPS - UPF0250 protein YPTB1093 OS=Yersinia pseudotuberculosis GN=YPTB1093 PE=3 SV=1 gi\|167399624, gi... - gi\|167399624\|ref\|ZP_02305148.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166206303, gi... - gi\|166212372\|ref\|ZP_02238407.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167057690, gi... - gi\|167423520\|ref\|ZP_02315273.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167422548, gi... - gi\|167422548\|ref\|ZP_02314301.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y1150_YERPB - UPF0250 protein YPTS_1150 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_1150 PE=... Y3025_YERPY - UPF0250 protein YPK_3025 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_3025 PE=3... gi\|229694512, gi... - gi\|229838146\|ref\|ZP_04458305.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi...	135.0	[0..1]	[87..1]
gi\|77957579 - gi\|77957579\|ref\|ZP_00821631.1\| COG2921: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	135.0	[0..1]	[87..1]
gi\|77962167 - gi\|77962167\|ref\|ZP_00825991.1\| COG2921: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	134.0	[0..1]	[87..1]
gi\|62179235, gi\|... - gi\|62179235\|ref\|YP_215652.1\| hypothetical protein SC0665 [Salmonella enterica subsp. enterica serova...	133.0	[0..1]	[86..12]
Y718_VIBPA - UPF0250 protein VP0718 OS=Vibrio parahaemolyticus GN=VP0718 PE=3 SV=1 Y718_VIBPA - UPF0250 protein VP0718 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP0718 PE=...	133.0	[0..2]	[87..7]
gi\|213160840 - gi\|213160840\|ref\|ZP_03346550.1\| hypothetical protein Salmoneentericaenterica_12618 [Salmonella enter... gi\|283784409\|ref... - hypothetical protein ROD_06491 [Citrobacter rodentium ICC168] gi\|213423410 - gi\|213423410\|ref\|ZP_03356397.1\| hypothetical protein Salmonentericaenterica_38512 [Salmonella enteri... gi\|213425101 - gi\|213425101\|ref\|ZP_03357851.1\| hypothetical protein SentesTyphi_05020 [Salmonella enterica subsp. e... gi\|213580661 - gi\|213580661\|ref\|ZP_03362487.1\| hypothetical protein SentesTyph_05372 [Salmonella enterica subsp. en... gi\|204320505, gi... - gi\|204930571\|ref\|ZP_03221501.1\| protein YbeD [Salmonella enterica subsp. enterica serovar Javiana st... YBED_SALG2 - UPF0250 protein YbeD OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ybeD PE=3 SV=1 YBED_SALEP - UPF0250 protein YbeD OS=Salmonella enteritidis PT4 (strain P125109) GN=ybeD PE=3 SV=1 gi\|213023128 - gi\|213023128\|ref\|ZP_03337575.1\| hypothetical protein Salmonelentericaenterica_11240 [Salmonella ente... gi\|197242084, gi... - gi\|197263829\|ref\|ZP_03163903.1\| protein YbeD [Salmonella enterica subsp. enterica serovar Saintpaul ... YBED_SALPK - UPF0250 protein YbeD OS=Salmonella paratyphi A (strain AKU_12601) GN=ybeD PE=3 SV=1 YBED_SALDC - UPF0250 protein YbeD OS=Salmonella dublin (strain CT_02021853) GN=ybeD PE=3 SV=1 lcl\|NC_016856.1_... - [gene=ybeD] [protein=hypothetical protein] [protein_id=YP_005236351.1] [location=complement(698525..... gi\|200390825, gi... - gi\|200390825\|ref\|ZP_03217436.1\| protein YbeD [Salmonella enterica subsp. enterica serovar Virchow st... YBED_SALHS - UPF0250 protein YbeD OS=Salmonella heidelberg (strain SL476) GN=ybeD PE=3 SV=1 gi\|194456084, gi... - gi\|194469720\|ref\|ZP_03075704.1\| protein YbeD [Salmonella enterica subsp. enterica serovar Kentucky s... YBED_SALSV - UPF0250 protein YbeD OS=Salmonella schwarzengrund (strain CVM19633) GN=ybeD PE=3 SV=1 YBED_SALA4 - UPF0250 protein YbeD OS=Salmonella agona (strain SL483) GN=ybeD PE=3 SV=1 YBED_SALTY - UPF0250 protein ybeD OS=Salmonella typhimurium GN=ybeD PE=3 SV=1 YBED_SALTI - UPF0250 protein ybeD OS=Salmonella typhi GN=ybeD PE=3 SV=1 gi\|29138263, gi\|... - gi\|29142632\|ref\|NP_805974.1\| hypothetical protein t2231 [Salmonella enterica subsp. enterica serovar... gi\|213999254 - gi\|213999254\|ref\|ZP_03409989.1\| hypothetical protein Salmonellentericaenterica_00190 [Salmonella ent... gi\|16759595 - gi\|16759595\|ref\|NP_455212.1\| hypothetical protein STY0687 [Salmonella enterica subsp. enterica serov... YBED_SALTI - UPF0250 protein YbeD OS=Salmonella typhi GN=ybeD PE=3 SV=1 YBED_SALTY - UPF0250 protein YbeD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ybeD PE=3 SV... gi\|213609715 - gi\|213609715\|ref\|ZP_03369541.1\| hypothetical protein SentesTyp_03980 [Salmonella enterica subsp. ent... gi\|213646563 - gi\|213646563\|ref\|ZP_03376616.1\| hypothetical protein SentesTy_04090 [Salmonella enterica subsp. ente... gi\|213855741 - gi\|213855741\|ref\|ZP_03383981.1\| hypothetical protein SentesT_17538 [Salmonella enterica subsp. enter... gi\|213982006 - gi\|213982006\|ref\|ZP_03409265.1\| hypothetical protein Salmonellaentericaenterica_49546 [Salmonella en... YBED_SALAR - UPF0250 protein YbeD OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ybeD PE=3... Y2527_CITK8 - UPF0250 protein CKO_02527 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=CK... gi\|205347091, gi... - gi\|205347091\|gb\|EDZ33722.1\| protein YbeD [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|168465810, gi... - gi\|195631820\|gb\|EDX50340.1\| protein YbeD [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|238911586 - gi\|238911586\|ref\|ZP_04655423.1\| hypothetical protein SentesTe_10672 [Salmonella enterica subsp. ente... YBED_SALPA - UPF0250 protein YbeD OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ybeD PE=3 SV=1 gi\|205340472, gi... - gi\|205340472\|gb\|EDZ27236.1\| protein YbeD [Salmonella enterica subsp. enterica serovar Weltevreden st... YBED_SALNS - UPF0250 protein YbeD OS=Salmonella newport (strain SL254) GN=ybeD PE=3 SV=1 gi\|205330920, gi... - gi\|205330920\|gb\|EDZ17684.1\| protein YbeD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|205334153, gi... - gi\|205334153\|gb\|EDZ20917.1\| protein YbeD [Salmonella enterica subsp. enterica serovar Kentucky str. ... YBED_SALTY - UPF0250 protein ybeD OS=Salmonella typhimurium GN=ybeD PE=3 SV=1 gi\|197290321, gi... - gi\|197290321\|gb\|EDY29677.1\| protein YbeD [Salmonella enterica subsp. enterica serovar Schwarzengrund... YBED_SALPA - UPF0250 protein ybeD OS=Salmonella paratyphi A GN=ybeD PE=3 SV=1 gi\|205340019, gi... - gi\|205340019\|gb\|EDZ26783.1\| protein YbeD [Salmonella enterica subsp. enterica serovar Heidelberg str...	133.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKLNELLE FPTPFTYKVM GQALPELVDQ VVEVVQRHAP GDYTPTVKPS SKGNYHSVSI  60
   61 TINATHIEQV ETLYEELGKI DIVRMVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1rwuA
Description:	Solution structure of conserved protein YbeD from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits