YRC Public Data Repository - Protein Structure Prediction

Protein:	YBDF_ECOLI
Organism:	Escherichia coli
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBDF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|68177976, gi\|... - gi\|95929674\|ref\|ZP_01312416.1\| protein of unknown function DUF419 [Desulfuromonas acetoxidans DSM 68...	155.0	[0..5]	[116..1]
gi\|88799594, gi\|... - gi\|88799594\|ref\|ZP_01115170.1\| hypothetical protein MED297_04392 [Reinekea sp. MED297], gi\|88777679\|...	154.0	[0..1]	[122..1]
gi\|88699334, gi\|... - gi\|88706398\|ref\|ZP_01104103.1\| protein containing DUF419 [gamma proteobacterium KT 71], gi\|88699334\|...	153.0	[0..5]	[119..1]
gi\|110833505, gi... - gi\|110833505\|ref\|YP_692364.1\| hypothetical protein ABO_0644 [Alcanivorax borkumensis SK2], gi\|110646...	153.0	[0..4]	[120..3]
gi\|83649541, gi\|... - gi\|83649541\|ref\|YP_437976.1\| hypothetical protein HCH_06934 [Hahella chejuensis KCTC 2396], gi\|83637...	152.0	[0..5]	[120..1]
gi\|110638801, gi... - gi\|110638801\|ref\|YP_679010.1\| hypothetical protein CHU_2412 [Cytophaga hutchinsonii ATCC 33406], gi\|...	151.0	[0..5]	[121..1]
gi\|71278691, gi\|... - gi\|71278691\|ref\|YP_267256.1\| hypothetical protein CPS_0498 [Colwellia psychrerythraea 34H], gi\|71144...	149.0	[0..4]	[119..1]
gi\|88860351, gi\|... - gi\|88860351\|ref\|ZP_01134989.1\| hypothetical protein PTD2_15042 [Pseudoalteromonas tunicata D2], gi\|8...	147.0	[0..5]	[120..1]
gi\|85831463, gi\|... - gi\|86141900\|ref\|ZP_01060424.1\| putative MmcQ-like protein [Flavobacterium sp. MED217], gi\|85831463\|g... gi\|85831463, gi\|... - gi\|86141900\|ref\|ZP_01060424.1\| putative MmcQ-like protein [Flavobacterium sp. MED217], gi\|85831463\|g...	145.0	[0..5]	[121..1]
gi\|254495257, gi... - gi\|86135438\|ref\|ZP_01054019.1\| hypothetical protein MED152_12059 [Tenacibaculum sp. MED152], gi\|8581...	145.0	[0..5]	[120..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKQSLHETA KRLALELPFV ELCWPFGPEF DVFKIGGKIF MLSSELRGVP FINLKSDPQK  60
   61 SLLNQQIYPS IKPGYHMNKK HWISVYPGEE ISEALLRDLI NDSWNLVVDG LAKRDQKRVR 120
  121 PG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2fkiA
Description:	NMR Structure of Protein yjbR from Escherichia coli; Northeast Structural Genomics Consortium Target ER226
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits