YRC Public Data Repository - Protein Structure Prediction

Protein:	YBCI_ECOLI
Organism:	Escherichia coli
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBCI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|194419072, gi... - gi\|83570237\|ref\|ZP_00921683.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Shigell...	151.0	[0..1]	[173..1]
gi\|90579098, gi\|... - gi\|90579098\|ref\|ZP_01234908.1\| hypothetical protein VAS14_05313 [Vibrio angustum S14], gi\|90439931\|g...	142.0	[0..3]	[170..2]
gi\|89073410, gi\|... - gi\|89073410\|ref\|ZP_01159934.1\| hypothetical protein SKA34_20712 [Photobacterium sp. SKA34], gi\|89050...	141.0	[0..3]	[170..2]
gi\|91186713, gi\|... - gi\|91215108\|ref\|ZP_01252080.1\| integral membrane protein [Psychroflexus torquis ATCC 700755], gi\|911...	141.0	[0..3]	[163..2]
gi\|86130824, gi\|... - gi\|86130824\|ref\|ZP_01049423.1\| integral membrane protein [Cellulophaga sp. MED134], gi\|85818235\|gb\|E...	141.0	[0..3]	[170..2]
gi\|86141902, gi\|... - gi\|86141902\|ref\|ZP_01060426.1\| hypothetical protein MED217_02185 [Flavobacterium sp. MED217], gi\|858... gi\|86141902, gi\|... - gi\|86141902\|ref\|ZP_01060426.1\| hypothetical protein MED217_02185 [Flavobacterium sp. MED217], gi\|858...	141.0	[0..3]	[170..2]
gi\|194412387, gi... - gi\|75209169\|ref\|ZP_00709420.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|75228698, gi\|... - gi\|75228698\|ref\|ZP_00715315.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|187732295, gi... - gi\|75177544\|ref\|ZP_00697625.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Shigell... gi\|75189590, gi\|... - gi\|75189590\|ref\|ZP_00702857.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|193067629, gi... - gi\|75238982\|ref\|ZP_00722964.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|81244416, gi\|... - gi\|82543005\|ref\|YP_406952.1\| hypothetical protein SBO_0416 [Shigella boydii Sb227], gi\|81244416\|gb\|A... gi\|209911002, gi... - gi\|209917743\|ref\|YP_002291827.1\| hypothetical protein ECSE_0552 [Escherichia coli SE11], gi\|20991100... gi\|218553091, gi... - gi\|218553091\|ref\|YP_002386004.1\| conserved hypothetical protein; putative inner membrane protein [Es...	136.0	[0..1]	[173..1]
gi\|91209602, gi\|... - gi\|91209602\|ref\|YP_539588.1\| hypothetical protein UTI89_C0556 [Escherichia coli UTI89], gi\|91071176\|... gi\|218364207, gi... - gi\|218557438\|ref\|YP_002390351.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|115511908, gi... - gi\|117622784\|ref\|YP_851697.1\| hypothetical protein APECO1_1487 [Escherichia coli APEC O1], gi\|115511... gi\|226898682, gi... - gi\|237707472\|ref\|ZP_04537953.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	136.0	[0..1]	[173..1]
gi\|88781661, gi\|... - gi\|88802803\|ref\|ZP_01118330.1\| integral membrane protein [Polaribacter irgensii 23-P], gi\|88781661\|g...	135.0	[0..3]	[171..2]
gi\|83850195, gi\|... - gi\|83856395\|ref\|ZP_00949924.1\| hypothetical protein CA2559_04870 [Croceibacter atlanticus HTCC2559],...	135.0	[0..3]	[157..2]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTVITHAAV PLCIGLGLGS KVIPPRLLFA GIILAMLPDA DVLSFKFGVA YGNVFGHRGF  60
   61 THSLVFAFVV PLLCVFIGRR WFRAGLIRCW LFLTVSLLSH SLLDSVTTGG KGVGWLWPWS 120
  121 DERFFAPWQV IKVAPFALSR YTTPYGHQVI ISELMWVWLP GMLLMGMLWW RRR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.04
Match:	1ah7A
Description:	PHOSPHOLIPASE C FROM BACILLUS CEREUS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.202509770725519	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: