YRC Public Data Repository - Protein Structure Prediction

Protein:	YBBP_ECOLI
Organism:	Escherichia coli
Length:	804 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBBP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75229343, gi\|... - gi\|75229343\|ref\|ZP_00715898.1\| COG3127: Predicted ABC-type transport system involved in lysophosphol...	416.0	[0..1]	[804..1]
gi\|193067648, gi... - gi\|75239008\|ref\|ZP_00722990.1\| COG3127: Predicted ABC-type transport system involved in lysophosphol...	413.0	[0..1]	[804..1]
gi\|56414338, gi\|... - gi\|56414338\|ref\|YP_151413.1\| hypothetical protein SPA2214 [Salmonella enterica subsp. enterica serov... gi\|197094735, gi... - gi\|197363258\|ref\|YP_002142895.1\| hypothetical protein SSPA2058 [Salmonella enterica subsp. enterica ...	413.0	[0..1]	[804..1]
gi\|73854554, gi\|... - gi\|74311077\|ref\|YP_309496.1\| putative oxidoreductase [Shigella sonnei Ss046], gi\|73854554\|gb\|AAZ8726...	412.0	[0..1]	[804..1]
gi\|12513386, gi\|... - gi\|15800233\|ref\|NP_286245.1\| putative oxidoreductase [Escherichia coli O157:H7 EDL933], gi\|12513386\|... gi\|208728237, gi... - gi\|208808436\|ref\|ZP_03250773.1\| efflux ABC transporter, permease protein [Escherichia coli O157:H7 s... gi\|13360017, gi\|... - gi\|15829813\|ref\|NP_308586.1\| putative oxidoreductase [Escherichia coli O157:H7], gi\|13360017\|dbj\|BAB... gi\|195936069 - gi\|195936069\|ref\|ZP_03081451.1\| putative oxidoreductase [Escherichia coli O157:H7 str. EC4024] gi\|208823140, gi... - gi\|208823140\|ref\|ZP_03263458.1\| efflux ABC transporter, permease protein [Escherichia coli O157:H7 s... gi\|208815470, gi... - gi\|208815470\|ref\|ZP_03256649.1\| efflux ABC transporter, permease protein [Escherichia coli O157:H7 s... gi\|187769752, gi... - gi\|187769752\|gb\|EDU33596.1\| efflux ABC transporter, permease protein [Escherichia coli O157:H7 str. ... gi\|168768461, gi... - gi\|189362470\|gb\|EDU80889.1\| efflux ABC transporter, permease protein [Escherichia coli O157:H7 str. ... gi\|168798071, gi... - gi\|189379270\|gb\|EDU97686.1\| efflux ABC transporter, permease protein [Escherichia coli O157:H7 str. ... gi\|254791688, gi... - gi\|254791688\|ref\|YP_003076525.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|189003024, gi... - gi\|189003024\|gb\|EDU72010.1\| efflux ABC transporter, permease protein [Escherichia coli O157:H7 str. ... gi\|188017721, gi... - gi\|188017721\|gb\|EDU55843.1\| efflux ABC transporter, permease protein [Escherichia coli O157:H7 str. ... gi\|189369199, gi... - gi\|189369199\|gb\|EDU87615.1\| efflux ABC transporter, permease protein [Escherichia coli O157:H7 str. ... gi\|168754611, gi... - gi\|189357993\|gb\|EDU76412.1\| efflux ABC transporter, permease protein [Escherichia coli O157:H7 str. ... gi\|13360017, gi\|... - gi\|15829813\|ref\|NP_308586.1\| putative oxidoreductase [Escherichia coli O157:H7 str. Sakai], gi\|13360... gi\|217320851, gi... - gi\|217324630\|ref\|ZP_03440714.1\| efflux ABC transporter, permease protein [Escherichia coli O157:H7 s... gi\|209159671, gi... - gi\|209398271\|ref\|YP_002269156.1\| efflux ABC transporter, permease protein [Escherichia coli O157:H7 ... gi\|25339988, gi\|... - pir\|\|A85549 probable oxidoreductase ybbP [imported] - Escherichia coli (strain O157:H7, substrain E...	412.0	[0..1]	[804..1]
gi\|218557413, gi... - gi\|218557413\|ref\|YP_002390326.1\| putative ABC transporter permease [Escherichia coli S88], gi\|218364... gi\|117622759, gi... - gi\|117622759\|ref\|YP_851672.1\| hypothetical protein APECO1_1512 [Escherichia coli APEC O1], gi\|115511...	412.0	[0..1]	[804..1]
gi\|75514619, gi\|... - gi\|75514619\|ref\|ZP_00736874.1\| COG3127: Predicted ABC-type transport system involved in lysophosphol... gi\|157065705, gi... - gi\|75194716\|ref\|ZP_00704786.1\| COG3127: Predicted ABC-type transport system involved in lysophosphol...	412.0	[0..1]	[804..1]
gi\|110640763, gi... - gi\|110640763\|ref\|YP_668491.1\| putative membrane protein YbbP [Escherichia coli 536], gi\|110342355\|gb... gi\|75240696, gi\|... - gi\|75240696\|ref\|ZP_00724603.1\| COG3127: Predicted ABC-type transport system involved in lysophosphol...	412.0	[0..1]	[804..1]
gi\|91071151, gi\|... - gi\|91209577\|ref\|YP_539563.1\| hypothetical protein UTI89_C0531 [Escherichia coli UTI89], gi\|91071151\|...	412.0	[0..1]	[804..1]
gi\|157080528, gi... - gi\|75189564\|ref\|ZP_00702831.1\| COG3127: Predicted ABC-type transport system involved in lysophosphol... gi\|218693958, gi... - gi\|218693958\|ref\|YP_002401625.1\| putative ABC transporter permease [Escherichia coli 55989], gi\|2183... gi\|209917712, gi... - gi\|209917712\|ref\|YP_002291796.1\| putative oxidoreductase [Escherichia coli SE11], gi\|209910971\|dbj\|B... gi\|218359830, gi... - gi\|218553062\|ref\|YP_002385975.1\| putative ABC transporter permease [Escherichia coli IAI1], gi\|21835...	412.0	[0..1]	[804..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIARWFWREW RSPSLLIVWL ALSLAVACVL ALGNISDRME KGLSQQSREF MAGDRALRSS  60
   61 REVPQAWLEE AQKRGLKVGK QLTFATMTFA GDTPQLANVK AVDDIYPMYG DLQTNPPGLK 120
  121 PQAGSVLLAP RLMALLNLKT GDTIDVG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [148-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DATLRIAGEV IQEPDSGFNP FQMAPRLMMN LADVDKTGAV QPGSRVTWRY KFGGNENQLD  60
   61 GYEKWLLPQL KPEQRWYGLE QDEGALGRSM ERSQQFLLLS ALLTLLLAVA AVAVAMNHYC 120
  121 RSRYDLVAIL KTLGAGRAQL RKLIVGQWLM VLTLSAVTGG AIGLLFENVL MVLLKPVLPA 180
  181 ALPPASLWPW LWALGTMTVI SLLVGLRPYR LLLA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	11.086186
Match:	PF02687.12
Description:	No description for PF02687.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [362-569]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQPLRVLRND VVANVWPLKF YLPIVSVVVV LLLAGLMGGS MLLWAVLAGA VVLALLCGVL  60
   61 GWMLLNVLRR MTLKSLPLRL AVSRLLRQPW STLSQLSAFS LSFMLLALLL VLRGDLLDRW 120
  121 QQQLPPESPN YFLINIATEQ VAPLKAFLAE HQIVPESFYP VVRARLTAIN DKPTEGNEDE 180
  181 ALNRELNLTW QNTRPDHNPI VAGNWPPK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [570-804]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADEVSMEEGL AKRLNVALGD TVTFMGDTQE FRAKVTSLRK VDWESLRPNF YFIFPEGALD  60
   61 GQPQSWLTSF RWENGNGMLT QLNRQFPTIS LLDIGAILKQ VGQVLEQVSR ALEVMVVLVT 120
  121 ACGMLLLLAQ VQVGMRQRHQ ELVVWRTLGA GKKLLRTTLW CEFAMLGFVS GLVAAIGAET 180
  181 ALAVLQAKVF DFPWEPDWRL WIVLPCSGAL LLSLFGGWLG ARLVKGKALF RQFAG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.522879
Match:	PF02687.12
Description:	No description for PF02687.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits