YRC Public Data Repository - Protein Structure Prediction

Protein:	YBAW_ECOLI
Organism:	Escherichia coli
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBAW_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|74017043, gi\|... - gi\|74017043\|ref\|ZP_00687668.1\| 4-hydroxybenzoyl-CoA thioesterase [Burkholderia ambifaria AMMD], gi\|7...	127.0	[0..2]	[129..18]
tr\|E4R7V3\|E4R7V3... - Uncharacterized protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_1255 PE=4 SV=1 tr\|I7BIA3\|I7BIA3... - Uncharacterized protein OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_5727 PE=4 SV=1 gi\|82740027, gi\|... - gi\|82740027\|ref\|ZP_00902797.1\| 4-hydroxybenzoyl-CoA thioesterase [Pseudomonas putida F1], gi\|8271289... gi\|24982666, gi\|... - gi\|26987953\|ref\|NP_743378.1\| hypothetical protein PP_1218 [Pseudomonas putida KT2440], gi\|24982666\|g... gi\|5514775 - gi\|5514775\|emb\|CAB50777.1\| hypothetical protein [Pseudomonas putida]	127.0	[0..3]	[129..12]
gi\|28871121, gi\|... - gi\|28871121\|ref\|NP_793740.1\| hypothetical protein PSPTO_3976 [Pseudomonas syringae pv. tomato str. D... gi\|213926185, gi... - gi\|213969187\|ref\|ZP_03397326.1\| conserved hypothetical protein TIGR00051 [Pseudomonas syringae pv. t... tr\|Q87Y36\|Q87Y36... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_3976 PE=4 SV=1	126.0	[0..3]	[128..12]
gi\|75830162, gi\|... - gi\|75830162\|ref\|ZP_00759445.1\| COG0824: Predicted thioesterase [Vibrio cholerae MO10], gi\|254848926\|... gi\|121727648, gi... - gi\|75814779\|ref\|ZP_00745330.1\| COG0824: Predicted thioesterase [Vibrio cholerae V52], gi\|121727648\|r... gi\|227081969, gi... - gi\|227081969\|ref\|YP_002810520.1\| hypothetical protein VCM66_1763 [Vibrio cholerae M66-2], gi\|2270098... gi\|229511698, gi... - gi\|229511698\|ref\|ZP_04401177.1\| 4-hydroxybenzoyl-CoA thioesterase family active site protein [Vibrio... gi\|11354652 - pir\|\|D82152 conserved hypothetical protein VC1840 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|153828556, gi... - gi\|153828556\|ref\|ZP_01981223.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887595... gi\|153827557, gi... - gi\|153827557\|ref\|ZP_01980224.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149738470... gi\|121591343, gi... - gi\|121591343\|ref\|ZP_01678631.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215468... gi\|9656367, gi\|1... - gi\|9656367\|gb\|AAF94988.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|153820330, gi... - gi\|153820330\|ref\|ZP_01972997.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650...	126.0	[0..2]	[123..25]
gi\|28897830, gi\|... - gi\|28897830\|ref\|NP_797435.1\| hypothetical protein VP1056 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28806043 - gi\|28806043\|dbj\|BAC59319.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	126.0	[0..4]	[127..11]
gi\|110735337 - gi\|110735337\|gb\|ABG89239.1\| hypothetical protein mh1646 [Mannheimia haemolytica]	125.0	[0..1]	[129..7]
gi\|205349878, gi... - gi\|205349878\|gb\|EDZ36509.1\| thioesterase superfamily protein [Salmonella enterica subsp. enterica se... gi\|168465548, gi... - gi\|195631760\|gb\|EDX50280.1\| thioesterase superfamily protein [Salmonella enterica subsp. enterica se... gi\|205343940, gi... - gi\|205343940\|gb\|EDZ30704.1\| thioesterase superfamily protein [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=ybaW] [protein=putative esterase] [protein_id=YP_005236152.1] [location=511860..512258] gi\|194446150, gi... - gi\|194446150\|ref\|YP_002039697.1\| thioesterase superfamily protein [Salmonella enterica subsp. enteri... gi\|167551730, gi... - gi\|205323425\|gb\|EDZ11264.1\| thioesterase superfamily protein [Salmonella enterica subsp. enterica se... gi\|167990438, gi... - gi\|205330851\|gb\|EDZ17615.1\| thioesterase superfamily protein [Salmonella enterica subsp. enterica se... gi\|168237569, gi... - gi\|197289560\|gb\|EDY28923.1\| thioesterase superfamily protein [Salmonella enterica subsp. enterica se... gi\|205340315, gi... - gi\|205340315\|gb\|EDZ27079.1\| thioesterase superfamily protein [Salmonella enterica subsp. enterica se... gi\|161364715, gi... - gi\|161615351\|ref\|YP_001589316.1\| hypothetical protein SPAB_03122 [Salmonella enterica subsp. enteric... gi\|16759434 - gi\|16759434\|ref\|NP_455051.1\| hypothetical protein STY0496 [Salmonella enterica subsp. enterica serov... gi\|213645999 - gi\|213645999\|ref\|ZP_03376052.1\| hypothetical protein SentesTy_00779 [Salmonella enterica subsp. ente... gi\|213850132 - gi\|213850132\|ref\|ZP_03381030.1\| hypothetical protein SentesT_00441 [Salmonella enterica subsp. enter... gi\|16418961, gi\|... - gi\|16763835\|ref\|NP_459450.1\| putative esterase [Salmonella typhimurium LT2], gi\|16418961\|gb\|AAL19409... gi\|213981522 - gi\|213981522\|ref\|ZP_03408781.1\| hypothetical protein Salmonellaentericaenterica_46867 [Salmonella en... gi\|29142794, gi\|... - gi\|29142794\|ref\|NP_806136.1\| hypothetical protein t2406 [Salmonella enterica subsp. enterica serovar... gi\|214002815 - gi\|214002815\|ref\|ZP_03413550.1\| hypothetical protein Salmonellentericaenterica_21861 [Salmonella ent... gi\|213160788 - gi\|213160788\|ref\|ZP_03346498.1\| hypothetical protein Salmoneentericaenterica_12318 [Salmonella enter... gi\|213418072 - gi\|213418072\|ref\|ZP_03351146.1\| hypothetical protein Salmonentericaenterica_09238 [Salmonella enteri... gi\|213425850 - gi\|213425850\|ref\|ZP_03358600.1\| hypothetical protein SentesTyphi_09459 [Salmonella enterica subsp. e... gi\|213586413 - gi\|213586413\|ref\|ZP_03368239.1\| hypothetical protein SentesTyph_36118 [Salmonella enterica subsp. en... gi\|198243913, gi... - gi\|198243913\|ref\|YP_002214408.1\| thioesterase superfamily protein [Salmonella enterica subsp. enteri... gi\|199602481, gi... - gi\|200390036\|ref\|ZP_03216647.1\| thioesterase superfamily protein [Salmonella enterica subsp. enteric... gi\|204930554, gi... - gi\|204930554\|ref\|ZP_03221484.1\| thioesterase superfamily protein [Salmonella enterica subsp. enteric... gi\|206707737, gi... - gi\|207855934\|ref\|YP_002242585.1\| hypothetical protein SEN0436 [Salmonella enterica subsp. enterica s... gi\|194406728, gi... - gi\|194448424\|ref\|YP_002044489.1\| thioesterase superfamily protein [Salmonella enterica subsp. enteri... gi\|194734324, gi... - gi\|194734324\|ref\|YP_002113485.1\| thioesterase superfamily protein [Salmonella enterica subsp. enteri... gi\|197265585, gi... - gi\|197265585\|ref\|ZP_03165659.1\| thioesterase superfamily protein [Salmonella enterica subsp. enteric... gi\|197094787, gi... - gi\|197363310\|ref\|YP_002142947.1\| hypothetical protein SSPA2110 [Salmonella enterica subsp. enterica ... gi\|224466819, gi... - gi\|224582292\|ref\|YP_002636090.1\| hypothetical protein SPC_0468 [Salmonella enterica subsp. enterica ... gi\|25301380, gi\|... - gi\|25301380\|pir\|\|AI0558 conserved hypothetical protein STY0496 [imported] - Salmonella enterica subs... gi\|56414390, gi\|... - gi\|56414390\|ref\|YP_151465.1\| hypothetical protein SPA2268 [Salmonella enterica subsp. enterica serov... gi\|62126699, gi\|... - gi\|62179066\|ref\|YP_215483.1\| hypothetical protein SC0496 [Salmonella enterica subsp. enterica serova...	125.0	[0..1]	[132..1]
gi\|37199211, gi\|... - gi\|37680463\|ref\|NP_935072.1\| hypothetical protein VV2279 [Vibrio vulnificus YJ016], gi\|37199211\|dbj\|...	125.0	[0..2]	[127..9]
gi\|71556726, gi\|... - gi\|71736173\|ref\|YP_275911.1\| hypothetical protein PSPPH_3771 [Pseudomonas syringae pv. phaseolicola ...	125.0	[0..3]	[128..12]
gi\|91685881, gi\|... - gi\|91781927\|ref\|YP_557133.1\| 4-hydroxybenzoyl-CoA thioesterase [Burkholderia xenovorans LB400], gi\|9...	125.0	[0..2]	[129..18]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTQIKVRGY HLDVYQHVNN ARYLEFLEEA RWDGLENSDS FQWMTAHNIA FVVVNININY  60
   61 RRPAVLSDLL TITSQLQQLN GKSGILSQVI TLEPEGQVVA DALITFVCID LKTQKALALE 120
  121 GELREKLEQM VK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1njkA
Description:	Hypothetical protein YbaW
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.75530090056705	bayes_pls_golite062009
catalytic activity	1.11649534052993	bayes_pls_golite062009
thiolester hydrolase activity	0.65794221902015	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.24094527143225	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: