YRC Public Data Repository - Protein Structure Prediction

Protein:	YBAV_ECOLI
Organism:	Escherichia coli
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBAV_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|73541033, gi\|... - gi\|73541033\|ref\|YP_295553.1\| RNA binding S1 [Ralstonia eutropha JMP134], gi\|72118446\|gb\|AAZ60709.1\| ...	147.0	[0..3]	[123..471]
gi\|15603313, gi\|... - gi\|15603313\|ref\|NP_246387.1\| hypothetical protein PM1448 [Pasteurella multocida subsp. multocida str...	147.0	[0..3]	[123..460]
gi\|48835190 - ref\|ZP_00292191.1\| COG2183: Transcriptional accessory protein [Thermobifida fusca] gi\|71914236, gi\|... - gi\|72160504\|ref\|YP_288161.1\| RNA binding S1:resolvase, RNase H-like fold [Thermobifida fusca YX], gi...	147.0	[0..3]	[123..442]
gi\|89892399 - gi\|89892399\|gb\|ABD78984.1\| HI0568-like protein [Haemophilus influenzae]	146.0	[0..3]	[123..441]
gi\|153950179, gi... - gi\|77631116\|ref\|ZP_00793702.1\| COG2183: Transcriptional accessory protein [Yersinia pseudotuberculos...	146.0	[0..3]	[123..440]
gi\|68249168, gi\|... - gi\|68249168\|ref\|YP_248280.1\| transcriptional accessory protein [Haemophilus influenzae 86-028NP], gi...	146.0	[0..3]	[123..441]
gi\|186700282, gi... - gi\|186897256\|ref\|YP_001874368.1\| RNA-binding S1 domain-containing protein [Yersinia pseudotuberculos... gi\|51591338, gi\|... - gi\|51598056\|ref\|YP_072247.1\| hypothetical protein YPTB3766 [Yersinia pseudotuberculosis IP 32953], g... Q664K3\|Q664K3_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis	146.0	[0..3]	[123..440]
gi\|108777739, gi... - gi\|229904628\|ref\|ZP_04519739.1\| predicted transcriptional accessory protein [Yersinia pestis Nepal51... gi\|165936122, gi... - gi\|89105816\|ref\|ZP_01178329.1\| COG2183: Transcriptional accessory protein [Yersinia pestis biovar Or... gi\|108809326, gi... - gi\|108809326\|ref\|YP_653242.1\| hypothetical protein YPA_3335 [Yersinia pestis Antiqua], gi\|108781239\|... gi\|162354355, gi... - gi\|77633464\|ref\|ZP_00795594.1\| COG2183: Transcriptional accessory protein [Yersinia pestis Angola], ... gi\|149290224, gi... - gi\|150260816\|ref\|ZP_01917544.1\| predicted transcriptional accessory protein [Yersinia pestis CA88-41... gi\|145597384, gi... - gi\|145597384\|ref\|YP_001161459.1\| hypothetical protein YPDSF_0061 [Yersinia pestis Pestoides F], gi\|1... gi\|229690381, gi... - gi\|229842071\|ref\|ZP_04462226.1\| predicted transcriptional accessory protein [Yersinia pestis biovar ... gi\|22127783, gi\|... - gi\|22127783\|ref\|NP_671206.1\| hypothetical protein y3913 [Yersinia pestis KIM], gi\|21960912\|gb\|AAM874... gi\|167398728, gi... - gi\|167398728\|ref\|ZP_02304252.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229696356, gi... - gi\|229839990\|ref\|ZP_04460149.1\| predicted transcriptional accessory protein [Yersinia pestis biovar ... gi\|25304122 - pir\|\|AC0017 conserved hypothetical protein YPO0134 [imported] - Yersinia pestis (strain CO92) gi\|167418783, gi... - gi\|167418783\|ref\|ZP_02310536.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|229836385, gi... - gi\|229836385\|ref\|ZP_04456552.1\| predicted transcriptional accessory protein [Yersinia pestis Pestoid... gi\|115345956, gi... - gi\|218927345\|ref\|YP_002345220.1\| hypothetical protein YPO0134 [Yersinia pestis CO92], gi\|16120477\|re... gi\|167425730, gi... - gi\|167425730\|ref\|ZP_02317483.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|45434852, gi\|... - gi\|45439997\|ref\|NP_991536.1\| RNA-binding protein [Yersinia pestis biovar Microtus str. 91001], gi\|45... gi\|167468692 - gi\|167468692\|ref\|ZP_02333396.1\| hypothetical protein YpesF_12509 [Yersinia pestis FV-1] gi\|165919977, gi... - gi\|165928028\|ref\|ZP_02223860.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166010602, gi... - gi\|166010602\|ref\|ZP_02231500.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166205586, gi... - gi\|166213288\|ref\|ZP_02239323.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ...	146.0	[0..3]	[123..440]
YHGF_HAEIN, Y568... - (P71353) Hypothetical protein HI0568, Uncharacterized protein HI_0568 OS=Haemophilus influenzae GN=H... Y568_HAEIN - Uncharacterized protein HI_0568 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd...	146.0	[0..3]	[123..441]
gi\|53758585, gi\|... - gi\|53804824\|ref\|YP_113508.1\| S1 RNA-binding domain-containing protein [Methylococcus capsulatus str....	145.0	[0..3]	[123..408]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHGIKALLI TLSLACAGMS HSALAAASVA KPTAVETKAE APAAQSKAAV PAKASDEEGT  60
   61 RVSINNASAE ELARAMNGVG LKKAQAIVSY REEYGPFKTV EDLKQVPGMG NSLVERNLAV 120
  121 LTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.154902
Match:	2oceA
Description:	No description for 2oceA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.02985696521664	bayes_pls_golite062009
hydrolase activity	0.53961787947767	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: