YRC Public Data Repository - Protein Structure Prediction

Protein:	YBAN_ECOLI
Organism:	Escherichia coli
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBAN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|66046968, gi\|... - gi\|66046968\|ref\|YP_236809.1\| hypothetical protein Psyr_3740 [Pseudomonas syringae pv. syringae B728a...	150.0	[0..3]	[120..15]
gi\|71557160, gi\|... - gi\|71736607\|ref\|YP_273770.1\| hypothetical protein PSPPH_1516 [Pseudomonas syringae pv. phaseolicola ...	145.0	[0..3]	[122..15]
gi\|48729647, gi\|... - gi\|77457693\|ref\|YP_347198.1\| hypothetical protein Pfl01_1466 [Pseudomonas fluorescens Pf0-1], gi\|773...	145.0	[0..1]	[120..11]
gi\|94416916, gi\|... - gi\|94416916\|ref\|ZP_01296739.1\| hypothetical protein PaerP_01001460 [Pseudomonas aeruginosa PA7], gi\|...	144.0	[0..3]	[121..15]
tr\|Q886D7\|Q886D7... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_1642 PE=4 SV=1 gi\|28868848, gi\|... - gi\|28868848\|ref\|NP_791467.1\| hypothetical protein PSPTO_1642 [Pseudomonas syringae pv. tomato str. D...	143.0	[0..3]	[121..15]
gi\|84328354 - gi\|84328354\|ref\|ZP_00976361.1\| COG2832: Uncharacterized protein conserved in bacteria [Pseudomonas a... gi\|84321828 - gi\|84321828\|ref\|ZP_00970181.1\| COG2832: Uncharacterized protein conserved in bacteria [Pseudomonas a... gi\|53727690 - gi\|53727690\|ref\|ZP_00139054.2\| COG2832: Uncharacterized protein conserved in bacteria [Pseudomonas a...	143.0	[0..2]	[120..1]
gi\|70728969, gi\|... - gi\|70728969\|ref\|YP_258703.1\| hypothetical protein PFL_1577 [Pseudomonas fluorescens Pf-5], gi\|683432...	142.0	[0..1]	[121..13]
gi\|49077214 - gi\|49077214\|gb\|AAT49646.1\| PA1439 [synthetic construct]	142.0	[0..3]	[120..15]
gi\|226898744, gi... - gi\|237707534\|ref\|ZP_04538015.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|91209541, gi\|... - gi\|91209541\|ref\|YP_539527.1\| hypothetical protein UTI89_C0495 [Escherichia coli UTI89], gi\|91071115\|... gi\|215485548, gi... - gi\|215485548\|ref\|YP_002327979.1\| hypothetical protein E2348C_0403 [Escherichia coli O127:H6 str. E23... gi\|227884519, gi... - gi\|227884519\|ref\|ZP_04002324.1\| membrane protein [Escherichia coli 83972], gi\|227838605\|gb\|EEJ49071.... gi\|26246482, gi\|... - gi\|26246482\|ref\|NP_752521.1\| hypothetical protein c0587 [Escherichia coli CFT073], gi\|26106880\|gb\|AA... gi\|191173697, gi... - gi\|75238220\|ref\|ZP_00722221.1\| COG2832: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|110640729, gi... - gi\|110640729\|ref\|YP_668457.1\| hypothetical protein ECP_0529 [Escherichia coli 536], gi\|110342321\|gb\|... gi\|218364147, gi... - gi\|218557378\|ref\|YP_002390291.1\| hypothetical protein ECS88_0465 [Escherichia coli S88], gi\|21836414... gi\|117622725, gi... - gi\|117622725\|ref\|YP_851638.1\| hypothetical protein APECO1_1547 [Escherichia coli APEC O1], gi\|115511... gi\|218688331, gi... - gi\|218688331\|ref\|YP_002396543.1\| hypothetical protein ECED1_0491 [Escherichia coli ED1a], gi\|2184258...	142.0	[0..1]	[125..1]
gi\|9947389, gi\|1... - gi\|9947389\|gb\|AAG04828.1\|AE004573_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|11347783 - pir\|\|E83466 conserved hypothetical protein PA1439 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|107100873 - gi\|107100873\|ref\|ZP_01364791.1\| hypothetical protein PaerPA_01001903 [Pseudomonas aeruginosa PACS2] gi\|254239789, gi... - gi\|254239789\|ref\|ZP_04933111.1\| conserved hypothetical protein [Pseudomonas aeruginosa 2192], gi\|194... gi\|115584605, gi... - gi\|116049384\|ref\|YP_791813.1\| hypothetical protein PA14_45850 [Pseudomonas aeruginosa UCBPP-PA14], g...	142.0	[0..3]	[120..15]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRIILIIIG WLAVVLGTLG VVLPVLPTTP FILLAAWCFA RSSPRFHAWL LYRSWFGSYL  60
   61 RFWQKHHAMP RGVKPRAILL ILLTFAISLW FVQMPWVRIM LLVILACLLF YMWRIPVIDE 120
  121 KQEKH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.229148
Match:	PF04304.4
Description:	No description for PF04304.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits