YRC Public Data Repository - Protein Structure Prediction

Protein:	YBAB_ECOLI
Organism:	Escherichia coli
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBAB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|113527138, gi... - gi\|113868362\|ref\|YP_726851.1\| recombinational DNA repair protein (RecF pathway) [Ralstonia eutropha ...	3.0E-37	[2..107]	[1..108]
Y1507_MANSM - Nucleoid-associated protein MS1507 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=MS1507 PE=3 ...	2.0E-34	[1..109]	[1..109]
gi\|26246486, gi\|... - gi\|26246486\|ref\|NP_752525.1\| hypothetical protein c0591 [Escherichia coli CFT073], gi\|26106884\|gb\|AA... gi\|91209545, gi\|... - gi\|91209545\|ref\|YP_539531.1\| hypothetical protein UTI89_C0499 [Escherichia coli UTI89], gi\|91071119\|... gi\|24111854, gi\|... - ref\|NP_706364.1\| hypothetical protein SF0416 [Shigella flexneri 2a str. 301], gb\|AAN42071.1\| orf, c...	5.0E-34	[1..109]	[6..114]
YBAB_ECO24 - Nucleoid-associated protein YbaB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ybaB PE=3 S...	7.0E-34	[1..109]	[1..109]
Y3840_PHOLL, Y2E... - UPF0133 protein plu3840 OS=Photorhabdus luminescens subsp. laumondii GN=plu3840 PE=3 SV=1, (Q7N0P1) ... Y3840_PHOLL - Nucleoid-associated protein plu3840 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 /...	1.0E-33	[1..109]	[1..109]
Y205_PASMU - Nucleoid-associated protein PM0205 OS=Pasteurella multocida (strain Pm70) GN=PM0205 PE=3 SV=1 Y205_PASMU - UPF0133 protein PM0205 OS=Pasteurella multocida GN=PM0205 PE=3 SV=1	1.0E-33	[1..109]	[1..109]
gi\|254843889, gi... - gi\|254848184\|ref\|ZP_05237534.1\| recombinational DNA repair protein [Vibrio cholerae MO10], gi\|254843... gi\|229608369, gi... - gi\|229608369\|ref\|YP_002879017.1\| transcriptional regulatory protein [Vibrio cholerae MJ-1236], gi\|22... gi\|148876363, gi... - gi\|153828121\|ref\|ZP_01980788.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887636... gi\|153824934, gi... - gi\|153824934\|ref\|ZP_01977601.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149741446... gi\|147675358, gi... - gi\|227117421\|ref\|YP_002819317.1\| hypothetical protein VC395_1069 [Vibrio cholerae O395], gi\|22701287... gi\|9655521, gi\|1... - gi\|9655521\|gb\|AAF94214.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|227081228, gi... - gi\|227081228\|ref\|YP_002809779.1\| hypothetical protein VCM66_1010 [Vibrio cholerae M66-2], gi\|2270091... gi\|11278458 - gi\|11278458\|pir\|\|A82247 conserved hypothetical protein VC1055 [imported] - Vibrio cholerae (strain N... gi\|153803674, gi... - gi\|153803674\|ref\|ZP_01958260.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124120793... gi\|229510980, gi... - gi\|229510980\|ref\|ZP_04400459.1\| transcriptional regulatory protein [Vibrio cholerae B33], gi\|2293509... gi\|229505350, gi... - gi\|229505350\|ref\|ZP_04394860.1\| transcriptional regulatory protein [Vibrio cholerae BX 330286], gi\|2... gi\|229518101, gi... - gi\|229518101\|ref\|ZP_04407545.1\| transcriptional regulatory protein [Vibrio cholerae RC9], gi\|2293448... gi\|229347206, gi... - gi\|229515437\|ref\|ZP_04404896.1\| transcriptional regulatory protein [Vibrio cholerae TMA 21], gi\|2293... gi\|229525664, gi... - gi\|229525664\|ref\|ZP_04415069.1\| transcriptional regulatory protein [Vibrio cholerae bv. albensis VL4... gi\|229523158, gi... - gi\|229523158\|ref\|ZP_04412565.1\| transcriptional regulatory protein [Vibrio cholerae TM 11079-80], gi...	2.0E-33	[1..109]	[12..120]
Y690_SODGM - Nucleoid-associated protein SG0690 OS=Sodalis glossinidius (strain morsitans) GN=SG0690 PE=3 SV=1	2.0E-33	[1..109]	[1..109]
gi\|221166968, gi... - gi\|221212755\|ref\|ZP_03585731.1\| conserved hypothetical protein TIGR00103 [Burkholderia multivorans C... gi\|221204346, gi... - gi\|221204346\|ref\|ZP_03577363.1\| conserved hypothetical protein TIGR00103 [Burkholderia multivorans C... gi\|221182027, gi... - gi\|221198095\|ref\|ZP_03571141.1\| conserved hypothetical protein TIGR00103 [Burkholderia multivorans C... gi\|84361910 - gi\|84361910\|ref\|ZP_00986549.1\| COG0718: Uncharacterized protein conserved in bacteria [Burkholderia ...	3.0E-33	[4..109]	[3..108]
Y308_HISS2 - Nucleoid-associated protein HSM_0308 OS=Histophilus somni (strain 2336) GN=HSM_0308 PE=3 SV=1 Y1309_HAES1 - Nucleoid-associated protein HS_1309 OS=Haemophilus somnus (strain 129Pt) GN=HS_1309 PE=3 SV=1	4.0E-33	[1..109]	[1..109]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGKGGLGNL MKQAQQMQEK MQKMQEEIAQ LEVTGESGAG LVKVTINGAH NCRRVEIDPS  60
   61 LLEDDKEMLE DLVAAAFNDA ARRIEETQKE KMASVSSGMQ LPPGFKMPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1pugA
Description:	Hypothetical upf0133 protein YbaB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits