YRC Public Data Repository - Protein Structure Prediction

Protein:	YBAA_ECOLI
Organism:	Escherichia coli
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBAA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|54298028, gi\|... - gi\|54298028\|ref\|YP_124397.1\| hypothetical protein lpp2085 [Legionella pneumophila str. Paris], gi\|53...	223.0	[0..1]	[116..1]
gi\|77953367, gi\|... - gi\|77953367\|ref\|ZP_00817776.1\| conserved hypothetical protein [Marinobacter aquaeolei VT8], gi\|77867...	216.0	[0..1]	[115..1]
gi\|91224408, gi\|... - gi\|91224408\|ref\|ZP_01259670.1\| hypothetical protein V12G01_17262 [Vibrio alginolyticus 12G01], gi\|91...	213.0	[0..1]	[117..1]
gi\|88859527, gi\|... - gi\|88859527\|ref\|ZP_01134167.1\| hypothetical protein PTD2_21127 [Pseudoalteromonas tunicata D2], gi\|8...	212.0	[0..1]	[115..1]
gi\|94426999, gi\|... - gi\|94500880\|ref\|ZP_01307406.1\| hypothetical protein RED65_11590 [Oceanobacter sp. RED65], gi\|9442699...	212.0	[0..1]	[115..1]
gi\|116186913, gi... - gi\|75857674\|ref\|ZP_00765287.1\| COG5507: Uncharacterized conserved protein [Vibrio sp. Ex25], gi\|1161...	210.0	[0..1]	[117..1]
gi\|78046884, gi\|... - gi\|78046884\|ref\|YP_363059.1\| hypothetical protein XCV1328 [Xanthomonas campestris pv. vesicatoria st...	210.0	[0..1]	[115..45]
gi\|66769367, gi\|... - gi\|66769367\|ref\|YP_244129.1\| hypothetical protein XC_3061 [Xanthomonas campestris pv. campestris str... gi\|188992553, gi... - gi\|188992553\|ref\|YP_001904563.1\| hypothetical protein xccb100_3158 [Xanthomonas campestris pv. campe... gi\|21112222, gi\|... - gi\|21230638\|ref\|NP_636555.1\| hypothetical protein XCC1181 [Xanthomonas campestris pv. campestris str...	210.0	[0..1]	[116..1]
gi\|110337665, gi... - gi\|110593158\|ref\|ZP_01381512.1\| Protein of unknown function DUF1428 [Acidovorax sp. JS42], gi\|110337...	209.0	[0..2]	[116..46]
gi\|113527454, gi... - gi\|113868678\|ref\|YP_727167.1\| hypothetical protein H16_A2720 [Ralstonia eutropha H16], gi\|113527454\|...	207.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYVDGFVVA VPADKKDAYR EMAAKAAPLF KEFGALRIVE CWASDVPDGK VTDFRMAVKA  60
   61 EENEEVVFSW IEYPSKEVRD AANQKMMSDP RMKEFGESMP FDGKRMIYGG FESIIDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.09691
Match:	2okqA
Description:	No description for 2okqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits