YRC Public Data Repository - Protein Structure Prediction

Protein:	YAHN_ECOLI
Organism:	Escherichia coli
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAHN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|76581979, gi\|... - gi\|76817506\|ref\|YP_336716.1\| LysE family protein [Burkholderia pseudomallei 1710b], gi\|76581979\|gb\|A...	170.0	[0..12]	[217..436]
gi\|111617741, gi... - gi\|111617741\|ref\|ZP_01404769.1\| Lysine exporter protein (LYSE/YGGA) [Acidovorax avenae subsp. citrul...	169.0	[0..2]	[217..682]
gi\|67665704, gi\|... - gi\|67665704\|ref\|ZP_00462964.1\| Lysine exporter protein (LYSE/YGGA) [Burkholderia cenocepacia HI2424]... gi\|67093808, gi\|... - gi\|67658720\|ref\|ZP_00456090.1\| Lysine exporter protein (LYSE/YGGA) [Burkholderia cenocepacia AU 1054...	166.0	[0..7]	[217..240]
gi\|83648725, gi\|... - gi\|83648725\|ref\|YP_437160.1\| putative threonine efflux protein [Hahella chejuensis KCTC 2396], gi\|83...	152.0	[0..13]	[218..1]
gi\|67548078, gi\|... - gi\|67548078\|ref\|ZP_00425973.1\| Lysine exporter protein (LYSE/YGGA) [Burkholderia vietnamiensis G4], ...	144.0	[0..12]	[222..107]
gi\|34495643, gi\|... - gi\|34495643\|ref\|NP_899858.1\| homoserine/homoserine lactone efflux protein [Chromobacterium violaceum...	144.0	[0..15]	[223..1]
gi\|77384934, gi\|... - gi\|77460931\|ref\|YP_350438.1\| lysine exporter protein LysE/YggA [Pseudomonas fluorescens Pf0-1], gi\|7...	144.0	[0..15]	[218..1]
gi\|89152072, gi\|... - gi\|89199797\|ref\|ZP_01178554.1\| Lysine exporter protein (LYSE/YGGA) [Bacillus cereus subsp. cytotoxis...	142.0	[0..17]	[218..1]
gi\|70732437, gi\|... - gi\|70732437\|ref\|YP_262199.1\| amino acid transporter LysE [Pseudomonas fluorescens Pf-5], gi\|68346736...	142.0	[0..15]	[218..1]
gi\|65319651 - gi\|65319651\|ref\|ZP_00392610.1\| COG1280: Putative threonine efflux protein [Bacillus anthracis str. A...	142.0	[0..17]	[218..21]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQLVHLFMD EITMDPLHAV YLTVGLFVIT FFNPGANLFV VVQTSLASGR RAGVLTGLGV  60
   61 ALGDAFYSGL GLFGLATLIT QCEEIFSLIR IVGGAYLLWF AWCSMRRQST PQMSTLQQPI 120
  121 SAPWYVFFRR GLITDLSNPQ TVLFFISIFS VTLNAETPTW ARLMAWAGIV LASIIWRVFL 180
  181 SQAFSLPAVR RAYGRMQRVA SRVIGAIIGV FALRLIYEGV TQR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	74.30103
Match:	PF01810.9
Description:	No description for PF01810.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits