YRC Public Data Repository - Protein Structure Prediction

Protein:	YAGY_ECOLI
Organism:	Escherichia coli
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAGY_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|1232059 - gi\|1232059\|gb\|AAA92619.1\| chaperone	192.0	[0..1]	[218..1]
gi\|238799305, gi... - gi\|77960106\|ref\|ZP_00823998.1\| COG3121: P pilus assembly protein, chaperone PapD [Yersinia mollareti...	187.0	[0..1]	[215..6]
gi\|113530526, gi... - gi\|116696027\|ref\|YP_841603.1\| fimbrial assembly chaperone [Ralstonia eutropha H16], gi\|113530526\|emb...	187.0	[0..7]	[218..14]
gi\|91075428, gi\|... - gi\|91213854\|ref\|YP_543840.1\| putative F17-like fimbrial chaperone [Escherichia coli UTI89], gi\|91075... gi\|190908850, gi... - gi\|191170626\|ref\|ZP_03032178.1\| chaperone [Escherichia coli F11], gi\|190908850\|gb\|EDV68437.1\| chaper...	185.0	[0..1]	[218..1]
gi\|24528000 - gi\|24528000\|emb\|CAD33727.1\| putative F17-like fimbrial chaperone [Escherichia coli] gi\|110345518, gi... - gi\|110643926\|ref\|YP_671656.1\| putative F17-like fimbrial chaperone [Escherichia coli 536], gi\|110345...	184.0	[0..1]	[218..1]
gi\|91771017, gi\|... - gi\|91771017\|ref\|ZP_01272835.1\| pili assembly chaperone [Psychrobacter sp. PRwf-1], gi\|91719933\|gb\|EA...	184.0	[0..5]	[218..15]
gi\|115284060, gi... - gi\|115358772\|ref\|YP_775910.1\| pili assembly chaperone [Burkholderia ambifaria AMMD], gi\|115284060\|gb...	183.0	[0..1]	[215..1]
gi\|93357734, gi\|... - gi\|94313882\|ref\|YP_587091.1\| pili assembly chaperone [Ralstonia metallidurans CH34], gi\|93357734\|gb\|...	183.0	[0..12]	[215..3]
MRKB_KLEPN - Chaperone protein MrkB OS=Klebsiella pneumoniae GN=mrkB PE=3 SV=1	182.0	[0..1]	[221..1]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKHLLPLAL LFSGISPAQA LDVGDISSFM NSDSSTLSKT IKNSTDSGRL INIRLERLSS  60
   61 PLDDGQVISM DKPDELLLTP ASLLLPAQAS EVIRFFYKGP ADEKERYYRI VWFDQALSDA 120
  121 QRDNANRSAV ATASARIGTI LVVAPRQANY HFQYANGSLT NTGNATLRIL AYGPCLKAAN 180
  181 GKECKENYYL MPGKSRRFTR VDTADNKGRV ALWQGDKFIP VK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	1l4iA
Description:	Periplasmic chaperone SfaE; SfaE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits