YRC Public Data Repository - Protein Structure Prediction

Protein:	YAGX_ECOLI
Organism:	Escherichia coli
Length:	841 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAGX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|157069441, gi... - gi\|75198132\|ref\|ZP_00708202.1\| COG3188: P pilus assembly protein, porin PapC [Escherichia coli HS], ...	683.0	[0..28]	[824..16]
gi\|192930667, gi... - gi\|75258398\|ref\|ZP_00729829.1\| COG3188: P pilus assembly protein, porin PapC [Escherichia coli E22],...	681.0	[0..28]	[824..16]
gi\|26111636, gi\|... - gi\|26251204\|ref\|NP_757244.1\| Outer membrane usher protein fimD precursor [Escherichia coli CFT073], ...	681.0	[0..28]	[824..31]
gi\|75235109, gi\|... - gi\|75235109\|ref\|ZP_00719365.1\| COG3188: P pilus assembly protein, porin PapC [Escherichia coli E1100...	681.0	[0..28]	[824..16]
gi\|194426542, gi... - gi\|75212121\|ref\|ZP_00712161.1\| COG3188: P pilus assembly protein, porin PapC [Escherichia coli B171]...	681.0	[0..28]	[824..16]
gi\|75229715 - gi\|75229715\|ref\|ZP_00716248.1\| COG3188: P pilus assembly protein, porin PapC [Escherichia coli B7A]	681.0	[0..28]	[824..16]
gi\|115515749, gi... - gi\|117626625\|ref\|YP_859948.1\| outer membrane usher protein FimD precursor [Escherichia coli APEC O1]... gi\|91213962, gi\|... - gi\|91213962\|ref\|YP_543948.1\| outer membrane usher protein FimD precursor [Escherichia coli UTI89], g...	680.0	[0..28]	[824..31]
gi\|85677060, gi\|... - gi\|89111029\|ref\|AP_004809.1\| outer membrane usher protein, type 1 fimbrial synthesis [Escherichia co... EG10311 - fimbrial usher outer membrane porin protein; FimCD chaperone-usher / Fimbrial usher outer membrane p... gi\|238861961, gi... - gi\|238903410\|ref\|YP_002929206.1\| outer membrane usher protein, type 1 fimbrial synthesis [Escherichi... EG10311 - fimbrial usher outer membrane porin protein; FimCD chaperone-usher / Fimbrial usher outer membrane p... FIMD_ECOLI - Outer membrane usher protein fimD precursor - Escherichia coli	679.0	[0..22]	[824..30]
gi\|75242248 - gi\|75242248\|ref\|ZP_00726010.1\| COG3188: P pilus assembly protein, porin PapC [Escherichia coli F11]	677.0	[0..28]	[824..16]
gi\|195937325 - gi\|195937325\|ref\|ZP_03082707.1\| FimD [Escherichia coli O157:H7 str. EC4024] gi\|168797883, gi... - gi\|189379584\|gb\|EDU98000.1\| outer membrane usher protein fimD [Escherichia coli O157:H7 str. EC508],... gi\|209397655, gi... - gi\|209397655\|ref\|YP_002273842.1\| outer membrane usher protein fimD [Escherichia coli O157:H7 str. EC... gi\|15834530, gi\|... - gi\|15834530\|ref\|NP_313303.1\| FimD [Escherichia coli O157:H7 str. Sakai], gi\|13364754\|dbj\|BAB38699.1\|... gi\|209749330, gi... - pir\|\|D91288 hypothetical protein ECs5276 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|15834530, gi\|... - gi\|15834530\|ref\|NP_313303.1\| FimD [Escherichia coli O157:H7], gi\|13364754\|dbj\|BAB38699.1\| export and... gi\|254595719, gi... - gi\|254796319\|ref\|YP_003081156.1\| outer membrane usher protein, type 1 fimbrial synthesis [Escherichi...	677.0	[0..28]	[824..31]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLRRFSPGL KAQFAFGMVF LFVQPDASAA DISAQQIGGV IIPQAFSQAL QDGMSVPLYI  60
   61 HLAGSQGRQD DQRIGSAFIW LDDGQLRIRK IQLEESEDNA SVSEQTRQQL MALANAPFNE 120
  121 ALTIPLTDNA QLDLSLRQLL LQLVVKREAL GTVLRSRSED IGQSSVNTLS SNLSYNLGVY 180
  181 NNQLRNGGSN TSSYLSLNNV TALREHHVVL DGSLYGIGSG QQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1ze3D
Description:	Crystal Structure of the Ternary Complex of FIMD (N-Terminal Domain) with FIMC and the Pilin Domain of FIMH
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [223-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSELYKAMYE RDFAGHRFAG GMLDTWNLQS LGPMTAISAG KIYGLSWGNQ ASSTIFDSSQ  60
   61 S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [284-422]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATPVIAFLPA AGEVHLTRDG RLLSVQNFTM GNHEVDTRGL PYGIYDVEVE VIVNGRVISK  60
   61 RTQRVNKLFS RGRGVGAPLA WQVWGGSFHM DRWSENGKKT RPAKESWLAG ASTSGSLSTL 120
  121 SWAATGYGYD NQAVGETRL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [423-671]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLPLGGAINV NLQNMLASDS SWSSIGSISA TLPGGFSSLW VNQEKTRIGN QLRRSDADNR  60
   61 AIGGTLNLNS LWSKLGTFSI SYNDDRRYNS HYYTADYYQN VYSGTFGSLG LRAGIQRYNN 120
  121 GDSNANTGKY IALDLSLPLG NWFSAGMTHQ NGYTMANLSA RKQFDEGTIR TVGANLSRAI 180
  181 SGDTGDDKTL SGGAYAQFDA RYASGTLNVN SAADGYVNTN LTANGSVGWQ GKNIAASGRT 240
  241 DGNAGVIFN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.221849
Match:	2bibA
Description:	Crystal structure of the complete modular teichioic acid phosphorylcholine esterase Pce (CbpE) from Streptococcus pneumoniae
Matching Structure (courtesy of the PDB):

Predicted Domain #5

Region A:
Residues: [672-841]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGLEDDGQIS AKINGRIFPL NGKRNYLPLS PYGRYEVELQ NSKNSLDSYD IVSGRKSRLT  60
   61 LYPGNVAVIE PEVKQMVTVS GRIRAEDGTL LANARINNHI GRTRTDENGE FVMDVDKKYP 120
  121 TIDFRYSGNK TCEVALELNQ ARGAVWVGDV VCSGLSSWAA VTQTGEENES

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.21
Match:	1nkgA
Description:	Rhamnogalacturonan lyase from Aspergillus aculeatus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits