YRC Public Data Repository - Protein Structure Prediction

Protein:	YAGW_ECOLI
Organism:	Escherichia coli
Length:	547 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAGW_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|190908480, gi... - gi\|191171180\|ref\|ZP_03032730.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190908480\|... gi\|110342150, gi... - gi\|110640558\|ref\|YP_668286.1\| hypothetical protein ECP_0353 [Escherichia coli 536], gi\|110342150\|gb\|... gi\|192929017, gi... - gi\|193064355\|ref\|ZP_03045437.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192929017\|... ECPD_ECOL6 - Fimbria adhesin EcpD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ecpD PE=1 SV=... sp\|Q8FKL3\|ECPD_ECOL6 - Fimbria adhesin EcpD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ecpD PE=1 SV=... gi\|227884704, gi... - gi\|227884704\|ref\|ZP_04002509.1\| receptor [Escherichia coli 83972], gi\|227838305\|gb\|EEJ48771.1\| recep... gi\|194427586, gi... - gi\|194427586\|ref\|ZP_03060134.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194414356... gi\|218703570, gi... - gi\|218703570\|ref\|YP_002411089.1\| putative surface or exported protein [Escherichia coli UMN026], gi\|...	1071.0	[0..1]	[547..1]
gi\|91070926, gi\|... - gi\|91209352\|ref\|YP_539338.1\| hypothetical protein UTI89_C0306 [Escherichia coli UTI89], gi\|91070926\|... gi\|117622564, gi... - gi\|117622564\|ref\|YP_851477.1\| hypothetical protein APECO1_1707 [Escherichia coli APEC O1], gi\|115511... ECPD_ECOKI - Fimbria adhesin EcpD OS=Escherichia coli O18:K1:H7 (strain IHE3034 / ExPEC) GN=ecpD PE=3 SV=1 gi\|237707725, gi... - gi\|237707725\|ref\|ZP_04538206.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|218363976, gi... - gi\|218557207\|ref\|YP_002390120.1\| putative surface or exported protein [Escherichia coli S88], gi\|218...	1070.0	[0..1]	[547..1]
gi\|168782636, gi... - gi\|188999859\|gb\|EDU68845.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187769034, gi... - gi\|187769034\|gb\|EDU32878.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168769639, gi... - gi\|189361337\|gb\|EDU79756.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189367695, gi... - gi\|189367695\|gb\|EDU86111.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|254590849, gi... - gi\|254791449\|ref\|YP_003076286.1\| predicted receptor [Escherichia coli O157:H7 str. TW14359], gi\|2545... gi\|208806084, gi... - gi\|208806084\|ref\|ZP_03248421.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195937770 - gi\|195937770\|ref\|ZP_03083152.1\| putative receptor [Escherichia coli O157:H7 str. EC4024] gi\|168799796, gi... - gi\|189377886\|gb\|EDU96302.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168788556, gi... - gi\|189371693\|gb\|EDU90109.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... ECPD_ECO57 - Fimbria adhesin EcpD OS=Escherichia coli O157:H7 GN=ecpD PE=2 SV=1 gi\|25340065, gi\|... - pir\|\|C85519 probable receptor yagW [imported] - Escherichia coli (strain O157:H7, substrain EDL933)... gi\|168755838, gi... - gi\|189356896\|gb\|EDU75315.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|12513076, gi\|... - gi\|15799995\|ref\|NP_286007.1\| putative receptor [Escherichia coli O157:H7 EDL933], gi\|12513076\|gb\|AAG... gi\|168749135, gi... - gi\|188016518\|gb\|EDU54640.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|13359777, gi\|... - gi\|15829574\|ref\|NP_308347.1\| putative receptor [Escherichia coli O157:H7 str. Sakai], gi\|13359777\|db... gi\|217325132, gi... - gi\|217325132\|ref\|ZP_03441216.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|209396118, gi... - gi\|209396118\|ref\|YP_002268912.1\| hypothetical protein ECH74115_0336 [Escherichia coli O157:H7 str. E... gi\|208823101, gi... - gi\|208823101\|ref\|ZP_03263419.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208815150, gi... - gi\|208815150\|ref\|ZP_03256329.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045...	1067.0	[0..1]	[547..1]
gi\|75257681 - gi\|75257681\|ref\|ZP_00729172.1\| hypothetical protein EcolE2_01002539 [Escherichia coli E22] gi\|75241931 - gi\|75241931\|ref\|ZP_00725750.1\| hypothetical protein EcolF_01001298 [Escherichia coli F11] gi\|75211178 - gi\|75211178\|ref\|ZP_00711285.1\| hypothetical protein EcolB_01001731 [Escherichia coli B171]	1055.0	[0..9]	[547..1]
gi\|75513552 - gi\|75513552\|ref\|ZP_00735943.1\| hypothetical protein Ecol5_01002285 [Escherichia coli 53638]	1055.0	[0..9]	[547..1]
gi\|83586336 - gi\|83586336\|ref\|ZP_00924971.1\| hypothetical protein Ecol1_01002463 [Escherichia coli 101-1]	1053.0	[0..9]	[547..1]
gi\|75189368 - gi\|75189368\|ref\|ZP_00702635.1\| hypothetical protein EcolE_01002653 [Escherichia coli E24377A]	1047.0	[0..9]	[547..1]
gi\|190904198, gi... - gi\|75231150\|ref\|ZP_00717572.1\| hypothetical protein EcolB7_01000733 [Escherichia coli B7A], gi\|19116...	1017.0	[0..25]	[547..1]
gi\|77963544 - gi\|77963544\|ref\|ZP_00827353.1\| hypothetical protein YmolA_01000230 [Yersinia mollaretii ATCC 43969]	363.0	[0..345]	[545..6]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVNLLITMI IFALIWPVTA LRAAVSKTTW ADAPAREFVF VENNSDDNFF VTPGGALDPR  60
   61 LTGANRWTGL KYTGSGTIYQ QSLGYIDNGY NTGLYTNWKF DMWLENSPVS SPLTGLRCIN 120
  121 WYAGCNMTTS LILPQTTDAS GFYGATVTSG GAKWMHGMLS DAFYQYMQQM PVGSSFTMTI 180
  181 NACQTSVNYD ASSGARCKDQ ASGNWYVRNV THTKAANLRL INTHSLAEVF INSD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [235-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVPTLGEGNA DCRTQTIGSR SGLSCKMVNY TLQTNGLSNT SIHIFPAIAN SSLASAVGAY  60
   61 DMQFSLNGSS WKPVSNTAYY YTFNEMKSAD SIYVFFSSNF FKQMVNLGI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [344-547]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDINTKDLFN FRFQNTTSPE SGWYEFSTSN TLIIKPRDFS ISIISDEYTQ TPSREGYVGS  60
   61 GESALDFGYI VTTSGKTAAD EVLIKVTGPA QVIGGRSYCV FSSDDGKAKV PFPATLSFIT 120
  121 RNGATKTYDA GCDDSWRDMT DALWLTTPWT DISGEVGQMD KTTVKFSIPM DNAISLRTVD 180
  181 DNGWFGEVSA SGEIHVQATW RNIN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits