YRC Public Data Repository - Protein Structure Prediction

Protein:	YAGL_ECOLI
Organism:	Escherichia coli
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAGL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|49483990, gi\|... - gi\|49483990\|ref\|YP_041214.1\| resolvase [Staphylococcus aureus subsp. aureus MRSA252], gi\|49242119\|em... gi\|221141712 - gi\|221141712\|ref\|ZP_03566205.1\| resolvase [Staphylococcus aureus subsp. aureus str. JKD6009] gi\|221138408 - gi\|221138408\|ref\|ZP_03563210.1\| resolvase [Staphylococcus aureus subsp. aureus str. JKD6008] gi\|22476847 - gi\|22476847\|gb\|AAM97336.1\|AF426834_2 resolvase/integrase BinL [Staphylococcus epidermidis] gi\|421394 - gi\|421394\|pir\|\|S11781 DNA-invertase - Staphylococcus aureus transposon Tn552 gi\|227245678, gi... - gi\|227557942\|ref\|ZP_03987989.1\| recombinase [Staphylococcus aureus subsp. aureus MN8], gi\|227245678\|...	155.0	[0..45]	[228..1]
gi\|114707895, gi... - gi\|114707895\|ref\|ZP_01440788.1\| Transposon Tn2501 resolvase [Fulvimarina pelagi HTCC2506], gi\|114536...	155.0	[0..19]	[229..18]
gi\|209483441 - gi\|209483441\|gb\|ACI47260.1\| InvA [Klebsiella pneumoniae] gi\|156936517, gi... - gi\|156936517\|ref\|YP_001440432.1\| hypothetical protein ESA_pESA2p06563 [Enterobacter sakazakii ATCC B... gi\|34013343, gi\|... - gi\|34500522\|ref\|NP_904293.1\| DNA invertase [Delftia acidovorans], gi\|34013343\|dbj\|BAC82016.1\| DNA in... gi\|46319637, gi\|... - gi\|67543486\|ref\|ZP_00421418.1\| Resolvase, N-terminal:Resolvase helix-turn-helix region [Burkholderia... gi\|51470645, gi\|... - gi\|51492602\|ref\|YP_067899.1\| DNA recombinase [Aeromonas punctata], gi\|51470645\|emb\|CAG15136.1\| DNA r... gi\|217507883, gi... - gi\|217970556\|ref\|YP_002355790.1\| Resolvase domain protein [Thauera sp. MZ1T], gi\|217507883\|gb\|ACK548...	154.0	[0..45]	[225..1]
gi\|67104477, gi\|... - gi\|67661892\|ref\|ZP_00459183.1\| Resolvase, N-terminal:Resolvase helix-turn-helix region [Burkholderia... gi\|67094311, gi\|... - gi\|67658176\|ref\|ZP_00455550.1\| Resolvase, N-terminal:Resolvase helix-turn-helix region [Burkholderia...	154.0	[0..21]	[225..5]
gi\|66862675, gi\|... - gi\|66968593\|ref\|YP_245470.1\| putative DNA invertase [Pseudomonas aeruginosa], gi\|66862675\|emb\|CAI469...	153.0	[0..45]	[225..1]
gi\|253316022 - gi\|253316022\|ref\|ZP_04839235.1\| Tn552 DNA invertase BinR [Staphylococcus aureus subsp. aureus str. C... BINR_STAAU - Transposon Tn552 DNA-invertase BinR OS=Staphylococcus aureus GN=resR PE=3 SV=1	153.0	[0..45]	[228..1]
gi\|110829362, gi... - gi\|121608377\|ref\|YP_996184.1\| resolvase domain-containing protein [Verminephrobacter eiseniae EF01-2...	152.0	[0..45]	[225..1]
gi\|11230706 - gi\|11230706\|emb\|CAC16668.1\| resolvase/integrase [Staphylococcus haemolyticus]	152.0	[0..45]	[228..1]
gi\|19352370, gi\|... - gi\|19352370\|ref\|NP_598128.1\| invertase-like protein [uncultured bacterium], gi\|19352365\|ref\|NP_59812...	152.0	[0..45]	[225..1]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGKILLYQL KYRWQSLSIF GCFLCKMTLF RYQKIIYDTG VHQMRSFFYT ICSSEQQESI  60
   61 TDHHSLAEIC QKFNILPEHV VIEQVDIKEV VSEQRLLRQL IHHEMNRQDT LVIPDLSCLG 120
  121 RTVEDLQNIL FFCLQKEMFI YSYHPASRIE PSAESCLSFL IARQDTIDIH NLKSTKSRYR 180
  181 HVKKKLGRKE GSKYRRDITI LKKGGFTQAE IAKKLSISLS TVKRHWNNGI IG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1gdtA
Description:	gamma,delta resolvase (C-terminal domain); gamma,delta resolvase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.306083871041672	bayes_pls_golite062009
transcription regulator activity	0.0696342306231097	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: