YRC Public Data Repository - Protein Structure Prediction

Protein:	YAFK_ECOLI
Organism:	Escherichia coli
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAFK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|194432691, gi... - gi\|83570261\|ref\|ZP_00921707.1\| COG3034: Uncharacterized protein conserved in bacteria [Shigella dyse...	249.0	[0..1]	[246..1]
gi\|24050497, gi\|... - gi\|24111717\|ref\|NP_706227.1\| hypothetical protein SF0274 [Shigella flexneri 2a str. 301], gi\|2405049... gi\|30040087, gi\|... - gi\|30061843\|ref\|NP_836014.1\| hypothetical protein S0295 [Shigella flexneri 2a str. 2457T], gi\|300400...	246.0	[0..1]	[246..1]
gi\|110613911, gi... - gi\|110804363\|ref\|YP_687883.1\| hypothetical protein SFV_0304 [Shigella flexneri 5 str. 8401], gi\|1106...	246.0	[0..1]	[246..1]
gi\|227884755, gi... - gi\|227884755\|ref\|ZP_04002560.1\| 2-dehydro-3-deoxyphosphooctonate aldolase [Escherichia coli 83972], ... gi\|26106670, gi\|... - gi\|26246272\|ref\|NP_752311.1\| hypothetical protein c0374 [Escherichia coli CFT073], gi\|26106670\|gb\|AA...	245.0	[0..1]	[246..1]
gi\|194713872, gi... - gi\|194738370\|ref\|YP_002113338.1\| hypothetical protein SeSA_A0361 [Salmonella enterica subsp. enteric... gi\|197214900, gi... - gi\|197251197\|ref\|YP_002145294.1\| hypothetical protein SeAg_B0346 [Salmonella enterica subsp. enteric... gi\|197264992, gi... - gi\|197264992\|ref\|ZP_03165066.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197363490, gi... - gi\|197363490\|ref\|YP_002143127.1\| hypothetical protein SSPA2281 [Salmonella enterica subsp. enterica ... gi\|205344088, gi... - gi\|205344088\|gb\|EDZ30852.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194445276, gi... - gi\|194445276\|ref\|YP_002039554.1\| hypothetical protein SNSL254_A0351 [Salmonella enterica subsp. ente... gi\|194451114, gi... - gi\|194451114\|ref\|YP_002044296.1\| hypothetical protein SeHA_C0353 [Salmonella enterica subsp. enteric... gi\|194456003, gi... - gi\|194469639\|ref\|ZP_03075623.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197288566, gi... - gi\|197288566\|gb\|EDY27943.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168240051, gi... - gi\|205339945\|gb\|EDZ26709.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168261273, gi... - gi\|205349892\|gb\|EDZ36523.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|238913298 - gi\|238913298\|ref\|ZP_04657135.1\| hypothetical protein SentesTe_19534 [Salmonella enterica subsp. ente... gi\|168465386, gi... - gi\|195631687\|gb\|EDX50207.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161615518, gi... - gi\|161615518\|ref\|YP_001589483.1\| hypothetical protein SPAB_03290 [Salmonella enterica subsp. enteric... gi\|205322377, gi... - gi\|205322377\|gb\|EDZ10216.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205328600, gi... - gi\|205328600\|gb\|EDZ15364.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205333436, gi... - gi\|205333436\|gb\|EDZ20200.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|213649645 - gi\|213649645\|ref\|ZP_03379698.1\| hypothetical protein SentesTy_21510 [Salmonella enterica subsp. ente... gi\|213852431 - gi\|213852431\|ref\|ZP_03381963.1\| hypothetical protein SentesT_05809 [Salmonella enterica subsp. enter... gi\|56128817, gi\|... - gi\|56414560\|ref\|YP_151635.1\| hypothetical protein SPA2443 [Salmonella enterica subsp. enterica serov... gi\|207855797, gi... - gi\|207855797\|ref\|YP_002242448.1\| hypothetical protein SEN0295 [Salmonella enterica subsp. enterica s... gi\|213162132 - gi\|213162132\|ref\|ZP_03347842.1\| hypothetical protein Salmoneentericaenterica_19903 [Salmonella enter... gi\|213425139 - gi\|213425139\|ref\|ZP_03357889.1\| hypothetical protein SentesTyphi_05232 [Salmonella enterica subsp. e... gi\|213580522 - gi\|213580522\|ref\|ZP_03362348.1\| hypothetical protein SentesTyph_04605 [Salmonella enterica subsp. en... gi\|197938989, gi... - gi\|198244473\|ref\|YP_002214267.1\| hypothetical protein SeD_A0342 [Salmonella enterica subsp. enterica... gi\|200389854, gi... - gi\|200389854\|ref\|ZP_03216465.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|204926845, gi... - gi\|204926845\|ref\|ZP_03218047.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205271417, gi... - gi\|205351636\|ref\|YP_002225437.1\| hypothetical protein SG0323 [Salmonella enterica subsp. enterica se... gi\|16763695, gi\|... - gi\|16763695\|ref\|NP_459310.1\| putative periplasmic protein [Salmonella typhimurium LT2], gi\|16418814\|... gi\|29138552, gi\|... - gi\|29142920\|ref\|NP_806262.1\| hypothetical protein t2538 [Salmonella enterica subsp. enterica serovar... gi\|25359104, gi\|... - gi\|25359104\|pir\|\|AF0542 probable exported protein STY0357 [imported] - Salmonella enterica subsp. en... gi\|16759307 - gi\|16759307\|ref\|NP_454924.1\| hypothetical protein STY0357 [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=yafK] [protein=hypothetical protein] [protein_id=YP_005235987.1] [location=complement(357495.....	234.0	[0..1]	[246..1]
gi\|77957148 - gi\|77957148\|ref\|ZP_00821212.1\| COG3034: Uncharacterized protein conserved in bacteria [Yersinia berc...	228.0	[0..1]	[246..1]
gi\|153950202, gi... - gi\|77631859\|ref\|ZP_00794445.1\| COG3034: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|186894254, gi... - gi\|186894254\|ref\|YP_001871366.1\| hypothetical protein YPTS_0928 [Yersinia pseudotuberculosis PB1/+],... Q66E07\|Q66E07_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|51588518, gi\|... - gi\|51595236\|ref\|YP_069427.1\| hypothetical protein YPTB0886 [Yersinia pseudotuberculosis IP 32953], g...	226.0	[0..1]	[246..1]
gi\|77974387 - gi\|77974387\|ref\|ZP_00829928.1\| COG3034: Uncharacterized protein conserved in bacteria [Yersinia fred...	226.0	[0..1]	[241..1]
gi\|45440541, gi\|... - gi\|45440541\|ref\|NP_992080.1\| hypothetical protein YP_0691 [Yersinia pestis biovar Microtus str. 9100...	225.0	[0..1]	[246..5]
gi\|167421605, gi... - gi\|167421605\|ref\|ZP_02313358.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167467189 - gi\|167467189\|ref\|ZP_02331893.1\| hypothetical protein YpesF_04645 [Yersinia pestis FV-1] gi\|149364916, gi... - gi\|149364916\|ref\|ZP_01886951.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149291329\|... gi\|89105996, gi\|... - gi\|89105996\|ref\|ZP_01178507.1\| COG3034: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|108808723, gi... - gi\|108808723\|ref\|YP_652639.1\| hypothetical protein YPA_2732 [Yersinia pestis Antiqua], gi\|108780636\|... gi\|165926620, gi... - gi\|165926620\|ref\|ZP_02222452.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|165989974, gi... - gi\|166010974\|ref\|ZP_02231872.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166205677, gi... - gi\|166212890\|ref\|ZP_02238925.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167398650, gi... - gi\|167398650\|ref\|ZP_02304174.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|162353027, gi... - gi\|77634928\|ref\|ZP_00797019.1\| COG3034: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|25359103 - pir\|\|AH0393 probable exported protein YPO3241 [imported] - Yersinia pestis (strain CO92) gi\|15981177, gi\|... - gi\|218930268\|ref\|YP_002348143.1\| hypothetical protein YPO3241 [Yersinia pestis CO92], gi\|16123400\|re... gi\|229838849, gi... - gi\|229838849\|ref\|ZP_04459008.1\| secreted protein [Yersinia pestis biovar Orientalis str. PEXU2], gi\|... gi\|229895999, gi... - gi\|229895999\|ref\|ZP_04511169.1\| secreted protein [Yersinia pestis Pestoides A], gi\|229700922\|gb\|EEO8... gi\|229899418, gi... - gi\|229899418\|ref\|ZP_04514561.1\| secreted protein [Yersinia pestis biovar Orientalis str. India 195],...	225.0	[0..1]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKIALILAM LLIPCVSFAG LLGSSSSTTP VSKEYKQQLM GSPVYIQIFK EERTLDLYVK  60
   61 MGEQYQLLDS YKICKYSGGL GPKQRQGDFK SPEGFYSVQR NQLKPDSRYY KAINIGFPNA 120
  121 YDRAHGYEGK YLMIHGDCVS IGCYAMTNQG IDEIFQFVTG ALVFGQPSVQ VSIYPFRMTD 180
  181 ANMKRHKYSN FKDFWEQLKP GYDYFEQTRK PPTVSVVNGR YVVSKPLSHE VVQPQLASNY 240
  241 TLPEAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1y7mA
Description:	Crystal Structure of the B. subtilis YkuD protein at 2 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits