YRC Public Data Repository - Protein Structure Prediction

Protein:	YAFA_ECOLI
Organism:	Escherichia coli
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAFA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83570393, gi\|... - gi\|83570393\|ref\|ZP_00921838.1\| COG1073: Hydrolases of the alpha/beta superfamily [Shigella dysenteri...	324.0	[0..1]	[414..1]
gi\|195938642 - gi\|195938642\|ref\|ZP_03084024.1\| fermentation/respiration switch protein [Escherichia coli O157:H7 st... gi\|208806714, gi... - gi\|208806714\|ref\|ZP_03249051.1\| fermentation-respiration switch protein [Escherichia coli O157:H7 st... gi\|208733480, gi... - gi\|208812203\|ref\|ZP_03253532.1\| fermentation-respiration switch protein [Escherichia coli O157:H7 st... gi\|208820548, gi... - gi\|208820548\|ref\|ZP_03260868.1\| fermentation-respiration switch protein [Escherichia coli O157:H7 st... gi\|168776120, gi... - gi\|187768399\|gb\|EDU32243.1\| fermentation-respiration switch protein [Escherichia coli O157:H7 str. E... gi\|168783000, gi... - gi\|188999611\|gb\|EDU68597.1\| fermentation-respiration switch protein [Escherichia coli O157:H7 str. E... gi\|168789712, gi... - gi\|189370739\|gb\|EDU89155.1\| fermentation-respiration switch protein [Escherichia coli O157:H7 str. E... gi\|254791399, gi... - gi\|254791399\|ref\|YP_003076236.1\| fermentation/respiration switch protein [Escherichia coli O157:H7 s... gi\|25302181, gi\|... - pir\|\|B90662 hypothetical protein ECs0266 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|189377348, gi... - gi\|189377348\|gb\|EDU95764.1\| fermentation-respiration switch protein [Escherichia coli O157:H7 str. E... gi\|168750223, gi... - gi\|188015603\|gb\|EDU53725.1\| fermentation-respiration switch protein [Escherichia coli O157:H7 str. E... gi\|189355724, gi... - gi\|189355724\|gb\|EDU74143.1\| fermentation-respiration switch protein [Escherichia coli O157:H7 str. E... gi\|189366407, gi... - gi\|189366407\|gb\|EDU84823.1\| fermentation-respiration switch protein [Escherichia coli O157:H7 str. E... gi\|189361050, gi... - gi\|189361050\|gb\|EDU79469.1\| fermentation-respiration switch protein [Escherichia coli O157:H7 str. E... gi\|13359723, gi\|... - gi\|15829520\|ref\|NP_308293.1\| fermentation/respiration switch protein [Escherichia coli O157:H7 str. ... FRSA_ECO5E - Esterase FrsA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=frsA PE=3 SV=1 FRSA_ECO57 - Esterase FrsA OS=Escherichia coli O157:H7 GN=frsA PE=3 SV=1 gi\|217326062, gi... - gi\|217326062\|ref\|ZP_03442146.1\| fermentation-respiration switch protein [Escherichia coli O157:H7 st...	324.0	[0..1]	[414..1]
gi\|12513013, gi\|... - gi\|15799944\|ref\|NP_285956.1\| fermentation/respiration switch protein [Escherichia coli O157:H7 EDL93... gi\|25302182 - gi\|25302182\|pir\|\|H85512 hypothetical protein yafA [imported] - Escherichia coli (strain O157:H7, su...	324.0	[0..1]	[414..1]
FRSA_ECOSM - Esterase FrsA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frsA PE=3 SV=1 FRSA_ECOLC - Esterase FrsA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frsA PE=3 SV=1 FRSA_ECO55 - Esterase FrsA OS=Escherichia coli (strain 55989 / EAEC) GN=frsA PE=3 SV=1 gi\|188494049, gi... - gi\|75513575\|ref\|ZP_00735966.1\| COG1073: Hydrolases of the alpha/beta superfamily [Escherichia coli 5... gi\|75231161, gi\|... - gi\|75231161\|ref\|ZP_00717583.1\| COG1073: Hydrolases of the alpha/beta superfamily [Escherichia coli B... gi\|242376069, gi... - gi\|251783796\|ref\|YP_002998100.1\| hypothetical protein B21_00237 [Escherichia coli BL21], gi\|24237606... gi\|83586315, gi\|... - gi\|83586315\|ref\|ZP_00924950.1\| COG1073: Hydrolases of the alpha/beta superfamily [Escherichia coli 1... FRSA_ECO7I - Esterase FrsA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=frsA PE=3 SV=1 gi\|253972254, gi... - gi\|254160353\|ref\|YP_003043461.1\| fermentation/respiration switch protein [Escherichia coli B str. RE... gi\|253774736, gi... - gi\|254287156\|ref\|YP_003052904.1\| fermentation/respiration switch protein [Escherichia coli BL21(DE3)... gi\|124526651, gi... - gi\|124526651\|ref\|ZP_01698560.1\| protein of unknown function DUF1100, hydrolase family protein [Esche...	324.0	[0..1]	[414..1]
FRSA_SHIBS - Esterase FrsA OS=Shigella boydii serotype 4 (strain Sb227) GN=frsA PE=3 SV=1	323.0	[0..1]	[414..1]
gi\|193068708, gi... - gi\|75237303\|ref\|ZP_00721350.1\| COG1073: Hydrolases of the alpha/beta superfamily [Escherichia coli E... FRSA_ECOHS - Esterase FrsA OS=Escherichia coli O9:H4 (strain HS) GN=frsA PE=3 SV=1 FRSA_ECOSE - Esterase FrsA OS=Escherichia coli (strain SE11) GN=frsA PE=3 SV=1 FRSA_ECO8A - Esterase FrsA OS=Escherichia coli O8 (strain IAI1) GN=frsA PE=3 SV=1	323.0	[0..1]	[414..1]
gi\|237707742, gi... - gi\|237707742\|ref\|ZP_04538223.1\| fermentation/respiration switch protein [Escherichia sp. 3_2_53FAA],... FRSA_ECO45 - Esterase FrsA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=frsA PE=3 SV=1 FRSA_ECOK1 - Esterase FrsA OS=Escherichia coli O1:K1 / APEC GN=frsA PE=3 SV=1 FRSA_ECOUT - Esterase FrsA OS=Escherichia coli (strain UTI89 / UPEC) GN=frsA PE=3 SV=1	322.0	[0..1]	[414..1]
gi\|192931162, gi... - gi\|75258758\|ref\|ZP_00730148.1\| COG1073: Hydrolases of the alpha/beta superfamily [Escherichia coli E... gi\|194414348, gi... - gi\|75211193\|ref\|ZP_00711300.1\| COG1073: Hydrolases of the alpha/beta superfamily [Escherichia coli B... FRSA_ECO24 - Esterase FrsA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frsA PE=3 SV=1	322.0	[0..1]	[414..1]
FRSA_SHIFL - Esterase FrsA OS=Shigella flexneri GN=frsA PE=3 SV=1 gi\|24050510, gi\|... - gi\|24111729\|ref\|NP_706239.1\| fermentation/respiration switch protein [Shigella flexneri 2a str. 301]... FRSA_SHIF8 - Esterase FrsA OS=Shigella flexneri serotype 5b (strain 8401) GN=frsA PE=3 SV=1 gi\|30040100, gi\|... - gi\|30061856\|ref\|NP_836027.1\| fermentation/respiration switch protein [Shigella flexneri 2a str. 2457...	322.0	[0..1]	[414..1]
FRSA_SHISS - Esterase FrsA OS=Shigella sonnei (strain Ss046) GN=frsA PE=3 SV=1	321.0	[0..1]	[414..1]

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Predicted Domain #1

Region A:
Residues: [1-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQANLSETL FKPRFKHPET STLVRRFNHG AQPPVQSALD GKTIPHWYRM INRLMWIWRG  60
   61 IDPREILDVQ ARIVMSDAER TDDDLYDTVI GYRGGNWIYE WATQAMVWQQ KACAEDDPQL 120
  121 SGRHWLHAAT LYNIAAYPHL KGDDLAEQAQ ALSNRAYEEA AQRLPGTMRQ MEFTVPGGAP 180
  181 ITGFLHMPKG DGPFPTVLMC GGLDAMQTDY YSLYERYFAP RGIAMLTIDM PSVGFSSKWK 240
  241 LTQDSSLLHQ HVLKALPNVP WVDHTRVAAF GFRFGANVAV RLAYLESPRL KAVACLGPVV 300
  301 HTLLSDFKCQ QQVPEMYLDV LASRLGMHDA SDEALRVELN RYSLKVQGLL GRRCPTPMLS 360
  361 GYWKNDPFSP EEDSRLITSS SADGKLLEIP FNPVYRNFDK GLQEITDWIE KRLC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.30103
Match:	2jbwA
Description:	No description for 2jbwA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits