YRC Public Data Repository - Protein Structure Prediction

Protein:	YAEQ_ECOLI
Organism:	Escherichia coli
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAEQ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|114777670, gi... - gi\|114777670\|ref\|ZP_01452630.1\| hypothetical protein SPV1_08381 [Mariprofundus ferrooxydans PV-1], g...	294.0	[0..1]	[181..1]
SO3107 - conserved hypothetical protein gi\|24349253, gi\|... - gi\|24374626\|ref\|NP_718669.1\| hypothetical protein SO_3107 [Shewanella oneidensis MR-1], gi\|24349253\|...	292.0	[0..1]	[179..1]
gi\|83652220, gi\|... - gi\|83718395\|ref\|YP_440643.1\| YaeQ family protein [Burkholderia thailandensis E264], gi\|83652220\|gb\|A...	291.0	[0..1]	[179..68]
gi\|77951719, gi\|... - gi\|77951719\|ref\|ZP_00816138.1\| conserved hypothetical protein [Marinobacter aquaeolei VT8], gi\|77869...	291.0	[0..1]	[176..1]
gi\|113969731, gi... - gi\|82497849\|ref\|ZP_00883374.1\| conserved hypothetical protein [Shewanella sp. MR-4], gi\|82404170\|gb\|... gi\|78687862, gi\|... - gi\|78687862\|ref\|ZP_00852597.1\| conserved hypothetical protein [Shewanella sp. ANA-3], gi\|78504421\|gb... gi\|78508796, gi\|... - gi\|78691793\|ref\|ZP_00856387.1\| conserved hypothetical protein [Shewanella sp. MR-7], gi\|78508796\|gb\|...	288.0	[0..1]	[179..1]
gi\|33596104 - gi\|33596104\|ref\|NP_883747.1\| hypothetical protein BPP1448 [Bordetella parapertussis 12822] gi\|33575937, gi\|... - gi\|33601501\|ref\|NP_889061.1\| hypothetical protein BB2522 [Bordetella bronchiseptica RB50], gi\|335759... gi\|33573107 - gi\|33573107\|emb\|CAE36750.1\| conserved hypothetical protein [Bordetella parapertussis]	287.0	[0..1]	[178..1]
gi\|91714768, gi\|... - gi\|91792766\|ref\|YP_562417.1\| YaeQ [Shewanella denitrificans OS217], gi\|91714768\|gb\|ABE54694.1\| YaeQ ...	286.0	[0..1]	[179..1]
gi\|68543376, gi\|... - gi\|68543376\|ref\|ZP_00583083.1\| YaeQ [Shewanella baltica OS155], gi\|68518907\|gb\|EAN42459.1\| YaeQ [She... gi\|151365934, gi... - gi\|153001316\|ref\|YP_001366997.1\| YaeQ family protein [Shewanella baltica OS185], gi\|151365934\|gb\|ABS... gi\|113951395, gi... - gi\|160875985\|ref\|YP_001555301.1\| YaeQ family protein [Shewanella baltica OS195], gi\|160861507\|gb\|ABX... gi\|149117579, gi... - gi\|217972754\|ref\|YP_002357505.1\| YaeQ family protein [Shewanella baltica OS223], gi\|217497889\|gb\|ACK...	286.0	[0..1]	[181..1]
gi\|69953704, gi\|... - gi\|69953704\|ref\|ZP_00640728.1\| YaeQ [Shewanella frigidimarina NCIMB 400], gi\|69163318\|gb\|EAN72475.1\|...	286.0	[0..1]	[178..1]
gi\|68213286, gi\|... - gi\|91774516\|ref\|YP_544272.1\| YaeQ [Methylobacillus flagellatus KT], gi\|91708503\|gb\|ABE48431.1\| YaeQ ...	286.0	[0..1]	[178..16]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKATIYKA TVNVADLDRN QFLDASLTLA RHPSETQERM MLRLLAWLKY ADERLQFTRG  60
   61 LCADDEPEAW LRNDHLGIDL WIELGLPDER RIKKACTQAA EVALFTYNSR AAQIWWQQNQ 120
  121 SKCVQFANLS VWYLDDEQLA KVSAFADRTM TLQATIQDGV IWLSDDKNNL EVNLTAWQQP 180
  181 S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.045757
Match:	2g3wA
Description:	No description for 2g3wA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.050018926486278	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: