YRC Public Data Repository - Protein Structure Prediction

Protein:	YADL_ECOLI
Organism:	Escherichia coli
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YADL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|145641776, gi... - gi\|145641776\|ref\|ZP_01797352.1\| putative F17-like fimbrial subunit [Haemophilus influenzae R3021], g... gi\|145641776 - gi\|145641776\|ref\|ZP_01797352.1\| putative F17-like fimbrial subunit [Haemophilus influenzae R3021] gi\|145271021, gi... - gi\|145639930\|ref\|ZP_01795530.1\| putative F17-like fimbrial subunit [Haemophilus influenzae PittII], ... gi\|46133375 - gi\|46133375\|ref\|ZP_00157090.2\| COG3539: P pilus assembly protein, pilin FimA [Haemophilus influenzae...	136.0	[0..2]	[200..1]
gi\|1923279 - gi\|1923279\|gb\|AAC46077.1\| major fimbria subunit [Haemophilus influenzae]	132.0	[0..7]	[200..1]
gi\|74310756, gi\|... - gi\|74310756\|ref\|YP_309175.1\| putative fimbrial protein [Shigella sonnei Ss046], gi\|73854233\|gb\|AAZ86...	121.0	[0..2]	[201..1]
gi\|218359486, gi... - gi\|218552718\|ref\|YP_002385631.1\| putative fimbrial-like adhesin protein [Escherichia coli IAI1], gi\|... gi\|218350335, gi... - gi\|218693603\|ref\|YP_002401270.1\| putative fimbrial-like adhesin protein [Escherichia coli 55989], gi... gi\|192931060, gi... - gi\|75258872\|ref\|ZP_00730262.1\| hypothetical protein EcolE2_01001498 [Escherichia coli E22], gi\|19306... gi\|192959032, gi... - gi\|75238842\|ref\|ZP_00722824.1\| hypothetical protein EcolE1_01000605 [Escherichia coli E110019], gi\|1... gi\|75230500, gi\|... - gi\|75230500\|ref\|ZP_00716981.1\| hypothetical protein EcolB7_01001316 [Escherichia coli B7A], gi\|19116... gi\|194413679, gi... - gi\|75210462\|ref\|ZP_00710613.1\| hypothetical protein EcolB_01002380 [Escherichia coli B171], gi\|19442... gi\|83585454, gi\|... - gi\|83585454\|ref\|ZP_00924099.1\| hypothetical protein Ecol1_01003316 [Escherichia coli 101-1], gi\|1944... gi\|242375970, gi... - gi\|251783697\|ref\|YP_002998001.1\| hypothetical protein B21_00135 [Escherichia coli BL21], gi\|24237597... gi\|209917328, gi... - gi\|209917328\|ref\|YP_002291412.1\| putative fimbrial protein [Escherichia coli SE11], gi\|209910587\|dbj... gi\|253972158, gi... - gi\|254160257\|ref\|YP_003043365.1\| predicted fimbrial-like adhesin protein [Escherichia coli B str. RE... gi\|253774835, gi... - gi\|254287060\|ref\|YP_003052808.1\| predicted fimbrial-like adhesin protein [Escherichia coli BL21(DE3)...	120.0	[0..2]	[201..1]
gi\|1737061 - gi\|1737061\|gb\|AAB70874.1\| pilin [Haemophilus influenzae biotype aegyptius]	120.0	[0..15]	[200..46]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTFKNLRYG LSSSVVLAAS LFSVLSYAAT DSIGLTVITT VEMGTCTATL VNDSDQDISV  60
   61 VDFGDVYISE INAKTKVKTF KLKFKDCAGI PNKKAQIKLT KRATCEGTAN DGAGFANGST 120
  121 AADKASAVAV EVWSTVTPAT GSATQFSCVT PASQEVTIST AANAVVYYPM SARLVVEKNK 180
  181 TVNNVTAGKF SAPATFTVTY N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	2uy6B
Description:	No description for 2uy6B was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits