YRC Public Data Repository - Protein Structure Prediction

Protein:	YADK_ECOLI
Organism:	Escherichia coli
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YADK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|191172772, gi... - gi\|75240272\|ref\|ZP_00724219.1\| COG3210: Large exoproteins involved in heme utilization or adhesion [... gi\|218688013, gi... - gi\|218688013\|ref\|YP_002396225.1\| protein yadK, putative fimbrial-like adhesin [Escherichia coli ED1a... gi\|110341949, gi... - gi\|110640357\|ref\|YP_668085.1\| protein YadK [Escherichia coli 536], gi\|110341949\|gb\|ABG68186.1\| prote...	124.0	[0..1]	[198..1]
gi\|218350334, gi... - gi\|218693602\|ref\|YP_002401269.1\| putative fimbrial-like adhesin protein [Escherichia coli 55989], gi... gi\|218359485, gi... - gi\|218552717\|ref\|YP_002385630.1\| putative fimbrial-like adhesin protein [Escherichia coli IAI1], gi\|... gi\|253972157, gi... - gi\|254160256\|ref\|YP_003043364.1\| predicted fimbrial-like adhesin protein [Escherichia coli B str. RE... gi\|74310755, gi\|... - gi\|74310755\|ref\|YP_309174.1\| putative fimbrial protein [Shigella sonnei Ss046], gi\|73854232\|gb\|AAZ86... gi\|209917327, gi... - gi\|209917327\|ref\|YP_002291411.1\| putative fimbrial protein [Escherichia coli SE11], gi\|209910586\|dbj... gi\|254287059, gi... - gi\|254287059\|ref\|YP_003052807.1\| predicted fimbrial-like adhesin protein [Escherichia coli BL21(DE3)... gi\|194421969, gi... - gi\|194439150\|ref\|ZP_03071232.1\| putative fimbrial protein [Escherichia coli 101-1], gi\|194421969\|gb\|... gi\|194428272, gi... - gi\|194428272\|ref\|ZP_03060814.1\| putative fimbrial protein [Escherichia coli B171], gi\|194413647\|gb\|E... gi\|193063192, gi... - gi\|193063192\|ref\|ZP_03044283.1\| putative fimbrial protein [Escherichia coli E22], gi\|192931100\|gb\|ED... gi\|190903633, gi... - gi\|191166382\|ref\|ZP_03028214.1\| putative fimbrial protein [Escherichia coli B7A], gi\|190903633\|gb\|ED... gi\|157159604, gi... - gi\|157159604\|ref\|YP_001456922.1\| hypothetical protein EcHS_A0140 [Escherichia coli HS], gi\|157065284... gi\|157156785, gi... - gi\|157156785\|ref\|YP_001461305.1\| hypothetical protein EcE24377A_0139 [Escherichia coli E24377A], gi\|...	123.0	[0..1]	[198..1]
gi\|25389888 - pir\|\|H90721 probable fimbrial-like protein [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|15829998, gi\|... - gi\|15829998\|ref\|NP_308771.1\| putative fimbrial-like protein [Escherichia coli O157:H7 str. Sakai], g... gi\|15829998, gi\|... - gi\|15829998\|ref\|NP_308771.1\| putative fimbrial-like protein [Escherichia coli O157:H7], gi\|13360202\|...	121.0	[0..3]	[198..1]
gi\|81240133, gi\|... - gi\|82775985\|ref\|YP_402332.1\| putative fimbrial-like protein [Shigella dysenteriae Sd197], gi\|8124013...	119.0	[0..11]	[198..6]
gi\|82546662, gi\|... - gi\|82546662\|ref\|YP_410609.1\| fimbrial protein [Shigella boydii Sb227], gi\|81248073\|gb\|ABB68781.1\| fi...	119.0	[0..2]	[198..26]
gi\|16132136, gi\|... - gb\|AAC77271.1\| fimbrial protein; fimbrial protein, internal segment [Escherichia coli K12], gi\|1613... gi\|537156\|gb\|AAA... - fimI [Escherichia coli] gi\|537156, gi\|13... - gi\|537156\|gb\|AAA97211.1\| fimI [Escherichia coli], pir\|\|S56540 fimI protein - Escherichia coli (strai...	119.0	[0..2]	[198..29]
gi\|117626623, gi... - gi\|117626623\|ref\|YP_859946.1\| FimI fimbrial protein [Escherichia coli APEC O1], gi\|115515747\|gb\|ABJ0...	119.0	[0..2]	[198..34]
gi\|168801373, gi... - gi\|189376481\|gb\|EDU94897.1\| putative fimbriae structural protein [Escherichia coli O157:H7 str. EC50... gi\|195939059 - gi\|195939059\|ref\|ZP_03084441.1\| putative fimbrial-like protein [Escherichia coli O157:H7 str. EC4024... gi\|168779201, gi... - gi\|189002914\|gb\|EDU71900.1\| putative fimbriae structural protein [Escherichia coli O157:H7 str. EC40... gi\|189373051, gi... - gi\|189373051\|gb\|EDU91467.1\| putative fimbriae structural protein [Escherichia coli O157:H7 str. EC86... gi\|15800423, gi\|... - gi\|15800423\|ref\|NP_286435.1\| putative fimbriae structural protein [Escherichia coli O157:H7 EDL933],... gi\|168767158, gi... - gi\|189363529\|gb\|EDU81948.1\| putative fimbriae structural protein [Escherichia coli O157:H7 str. EC44... gi\|25299210 - pir\|\|G85572 probable fimbriae structural protein ybgD [imported] - Escherichia coli (strain O157:H7,... gi\|187767663, gi... - gi\|187767663\|gb\|EDU31507.1\| putative fimbriae structural protein [Escherichia coli O157:H7 str. EC41... gi\|168757171, gi... - gi\|189355821\|gb\|EDU74240.1\| putative fimbriae structural protein [Escherichia coli O157:H7 str. EC44... gi\|168763999, gi... - gi\|189365911\|gb\|EDU84327.1\| putative fimbriae structural protein [Escherichia coli O157:H7 str. EC45... gi\|254791865, gi... - gi\|254791865\|ref\|YP_003076702.1\| predicted fimbrial-like adhesin protein [Escherichia coli O157:H7 s... gi\|188015196, gi... - gi\|188015196\|gb\|EDU53318.1\| putative fimbriae structural protein [Escherichia coli O157:H7 str. EC41... gi\|217326377, gi... - gi\|217326377\|ref\|ZP_03442461.1\| fimbrial protein [Escherichia coli O157:H7 str. TW14588], gi\|2173225... gi\|208737425, gi... - gi\|208823232\|ref\|ZP_03263550.1\| putative fimbriae structural protein [Escherichia coli O157:H7 str. ... gi\|209162172, gi... - gi\|209400772\|ref\|YP_002269341.1\| fimbrial protein [Escherichia coli O157:H7 str. EC4115], gi\|2091621... gi\|208729352, gi... - gi\|208809551\|ref\|ZP_03251888.1\| putative fimbriae structural protein [Escherichia coli O157:H7 str. ... gi\|208815877, gi... - gi\|208815877\|ref\|ZP_03257056.1\| putative fimbriae structural protein [Escherichia coli O157:H7 str. ...	118.0	[0..11]	[198..6]
gi\|1737061 - gi\|1737061\|gb\|AAB70874.1\| pilin [Haemophilus influenzae biotype aegyptius]	118.0	[0..14]	[197..46]
gi\|91213960, gi\|... - gi\|91213960\|ref\|YP_543946.1\| FimI fimbrial protein [Escherichia coli UTI89], gi\|91075534\|gb\|ABE10415...	118.0	[0..2]	[198..29]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPTQRKLMK RIILFLSLLF CIACPAIAGQ DIDLVANVKN STCKSGISNQ GNIDLGVVGV  60
   61 GYFSGNVTPE SYQPGGKEFT ITVSDCALQG TGDVLNQLHI DFRALSGVMA AGSRQIFANE 120
  121 ISSGASNVGV VIFSTQDSAN TFNVLNASGG SRSVYPVMSD DMNGSSWKFS TRMQKIDPAL 180
  181 SVTSGQLMSH VLVDIYYE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.522879
Match:	1pdkB
Description:	PapK pilus subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits