YRC Public Data Repository - Protein Structure Prediction

Protein:	YACL_ECOLI
Organism:	Escherichia coli
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YACL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|22124685, gi\|... - gi\|22124685\|ref\|NP_668108.1\| hypothetical protein y0772 [Yersinia pestis KIM], gi\|21957498\|gb\|AAM843...	185.0	[0..1]	[119..32]
gi\|224582006, gi... - gi\|224582006\|ref\|YP_002635804.1\| hypothetical protein SPC_0173 [Salmonella enterica subsp. enterica ... gi\|62178730, gi\|... - gi\|62178730\|ref\|YP_215147.1\| hypothetical protein SC0160 [Salmonella enterica subsp. enterica serova...	181.0	[0..1]	[119..32]
gi\|77976068, gi\|... - gi\|77976068\|ref\|ZP_00831601.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia fred...	179.0	[0..1]	[119..1]
Y717_YERPS - UPF0231 protein YPTB0717 OS=Yersinia pseudotuberculosis GN=YPTB0717 PE=3 SV=1 gi\|161484870 - gi\|161484870\|ref\|NP_668108.2\| hypothetical protein y0772 [Yersinia pestis KIM] Y3414_YERPE - UPF0231 protein YPO3414/y0772/YP_0271 OS=Yersinia pestis GN=YPO3414 PE=3 SV=1 gi\|165991107, gi... - gi\|166010200\|ref\|ZP_02231098.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165922477, gi... - gi\|165925865\|ref\|ZP_02221697.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167398697, gi... - gi\|167398697\|ref\|ZP_02304221.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166204693, gi... - gi\|166214062\|ref\|ZP_02240097.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167423825, gi... - gi\|167423825\|ref\|ZP_02315578.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167420817, gi... - gi\|167420817\|ref\|ZP_02312570.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y717_YERPS - UPF0231 protein YPTB0717 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB0717 PE=3... gi\|45440131, gi\|... - gi\|45440131\|ref\|NP_991670.1\| hypothetical protein YP_0271 [Yersinia pestis biovar Microtus str. 9100... gi\|15981341, gi\|... - gi\|218930431\|ref\|YP_002348306.1\| hypothetical protein YPO3414 [Yersinia pestis CO92], gi\|16123563\|re... gi\|89104444, gi\|... - gi\|89104444\|ref\|ZP_01176987.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|153997543, gi... - gi\|153997543\|ref\|ZP_02022643.1\| hypothetical protein YPE_4002 [Yersinia pestis CA88-4125], gi\|149289... Y2916_YERPA - UPF0231 protein YPA_2916 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_2916 PE=3 SV=1 Y2941_YERPP - UPF0231 protein YPDSF_2941 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_2941 PE=3 SV=1 Y674_YERPN - UPF0231 protein YPN_0674 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_0674 PE=3 SV=1 Y1027_YERPG - UPF0231 protein YpAngola_A1027 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A1027 PE=3... Y747_YERPB - UPF0231 protein YPTS_0747 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_0747 PE=... Y3358_YERP3 - UPF0231 protein YpsIP31758_3358 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... Y3486_YERPY - UPF0231 protein YPK_3486 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_3486 PE=3... gi\|229695420, gi... - gi\|229839054\|ref\|ZP_04459213.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229896533, gi... - gi\|229896533\|ref\|ZP_04511701.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229700607\|gb\|EEO... gi\|229687110, gi... - gi\|229899618\|ref\|ZP_04514759.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]...	178.0	[0..1]	[119..1]
gi\|77957553 - gi\|77957553\|ref\|ZP_00821606.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia berc...	177.0	[0..1]	[120..1]
gi\|77977271 - gi\|77977271\|ref\|ZP_00832724.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia inte...	177.0	[0..1]	[120..1]
gi\|77962128, gi\|... - gi\|77962128\|ref\|ZP_00825953.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia moll...	177.0	[0..1]	[117..1]
gi\|75230519 - gi\|75230519\|ref\|ZP_00717000.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75189218 - gi\|75189218\|ref\|ZP_00702485.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c...	176.0	[0..1]	[120..17]
gi\|254037535, gi... - gi\|254037535\|ref\|ZP_04871612.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684064... gi\|237704275, gi... - gi\|237704275\|ref\|ZP_04534756.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|81244133, gi\|... - gi\|82542722\|ref\|YP_406669.1\| hypothetical protein SBO_0108 [Shigella boydii Sb227], gi\|81244133\|gb\|A... gi\|83569700 - gi\|83569700\|ref\|ZP_00921150.1\| COG3112: Uncharacterized protein conserved in bacteria [Shigella dyse... gi\|91070761, gi\|... - gi\|91209187\|ref\|YP_539173.1\| hypothetical protein UTI89_C0132 [Escherichia coli UTI89], gi\|91070761\|... gi\|75176532 - gi\|75176532\|ref\|ZP_00696669.1\| COG3112: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|13359579, gi\|... - gi\|15829377\|ref\|NP_308150.1\| hypothetical protein ECs0123 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|75194334 - gi\|75194334\|ref\|ZP_00704404.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75210446 - gi\|75210446\|ref\|ZP_00710597.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|13359579, gi\|... - gi\|15829377\|ref\|NP_308150.1\| hypothetical protein ECs0123 [Escherichia coli O157:H7], gi\|13359579\|db... gi\|75233846 - gi\|75233846\|ref\|ZP_00718316.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|209746270, gi... - gi\|7449778\|pir\|\|G64734 yacL protein - Escherichia coli (strain K-12), gi\|25325229\|pir\|\|C85495 hypoth... gi\|75258888 - gi\|75258888\|ref\|ZP_00730278.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|15799803, gi\|... - gi\|15799803\|ref\|NP_285815.1\| hypothetical protein Z0129 [Escherichia coli O157:H7 EDL933], gi\|125128... gi\|75511994 - gi\|75511994\|ref\|ZP_00734589.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|16128112, gi\|... - gb\|AAC73230.1\| orf, hypothetical protein; conserved hypothetical protein [Escherichia coli K12], gi... gi\|81239556, gi\|... - gi\|82775408\|ref\|YP_401754.1\| hypothetical protein SDY_0026 [Shigella dysenteriae Sd197], gi\|81239556...	175.0	[0..1]	[120..17]
gi\|110804180, gi... - gi\|110804180\|ref\|YP_687700.1\| hypothetical protein SFV_0110 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24111562, gi\|... - gi\|24111562\|ref\|NP_706072.1\| hypothetical protein SF0116 [Shigella flexneri 2a str. 301], gi\|2405032... gi\|30061684, gi\|... - gi\|30061684\|ref\|NP_835855.1\| hypothetical protein S0118 [Shigella flexneri 2a str. 2457T], gi\|300399...	175.0	[0..1]	[120..17]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYEFLRDIT GVVKVRMSMG HEVVGHWFNE EVKENLALLD EVEQAAHALK GSERSWQRAG  60
   61 HEYTLWMDGE EVMVRANQLE FAGDEMEEGM NYYDEESLSL CGVEDFLQVV AAYRNFVQQK 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	77.221849
Match:	PF06062.2
Description:	No description for PF06062.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits