YRC Public Data Repository - Protein Structure Prediction

Protein:	Y980_PASMU
Organism:	Pasteurella multocida
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y980_PASMU.

Description	E-value	Query Range	Subject Range
Y1220_METCA - UPF0082 protein MCA1220 OS=Methylococcus capsulatus GN=MCA1220 PE=3 SV=1 Y1220_METCA - Probable transcriptional regulatory protein MCA1220 OS=Methylococcus capsulatus (strain ATCC 33009 /...	375.0	[0..1]	[246..1]
Y433_HAEI8 - Probable transcriptional regulatory protein NTHI0433 OS=Haemophilus influenzae (strain 86-028NP) GN=... Y4390_HAEIG - Probable transcriptional regulatory protein CGSHiGG_04390 OS=Haemophilus influenzae (strain PittGG) ... Y1480_HAEIE - Probable transcriptional regulatory protein CGSHiEE_01480 OS=Haemophilus influenzae (strain PittEE) ... gi\|145640259 - gi\|145640259\|ref\|ZP_01795843.1\| hypothetical protein CGSHiR3021_09380 [Haemophilus influenzae R3021] gi\|145272367, gi... - gi\|145638772\|ref\|ZP_01794381.1\| dATP pyrophosphohydrolase [Haemophilus influenzae PittII], gi\|145272... gi\|144986761, gi... - gi\|145632566\|ref\|ZP_01788300.1\| hypothetical protein CGSHi3655_02089 [Haemophilus influenzae 3655], ... gi\|144979135, gi... - gi\|145628665\|ref\|ZP_01784465.1\| Holliday junction resolvase [Haemophilus influenzae 22.1-21], gi\|144... Y315_HAEIN - UPF0082 protein HI_0315 OS=Haemophilus influenzae GN=HI_0315 PE=1 SV=1 gi\|53732943 - gi\|53732943\|ref\|ZP_00155322.2\| COG0217: Uncharacterized conserved protein [Haemophilus influenzae R2... gi\|53733202 - gi\|53733202\|ref\|ZP_00156156.2\| COG0217: Uncharacterized conserved protein [Haemophilus influenzae R2... Y315_HAEIN - Probable transcriptional regulatory protein HI_0315 OS=Haemophilus influenzae (strain ATCC 51907 / D... gi\|145274845, gi... - gi\|145640259\|ref\|ZP_01795843.1\| hypothetical protein CGSHiR3021_09380 [Haemophilus influenzae R3021]... gi\|229810496, gi... - gi\|229846403\|ref\|ZP_04466511.1\| hypothetical protein CGSHi7P49H1_07020 [Haemophilus influenzae 7P49H...	373.0	[0..1]	[246..1]
Y4410_PSEPF - Probable transcriptional regulatory protein Pfl01_4410 OS=Pseudomonas fluorescens (strain Pf0-1) GN=...	373.0	[0..1]	[246..1]
Y1210_ACTP7 - Probable transcriptional regulatory protein APP7_1210 OS=Actinobacillus pleuropneumoniae serotype 7 ... Y1151_ACTP2 - Probable transcriptional regulatory protein APL_1151 OS=Actinobacillus pleuropneumoniae serotype 5b ... gi\|32033872 - gi\|32033872\|ref\|ZP_00134143.1\| COG0217: Uncharacterized conserved protein [Actinobacillus pleuropneu...	372.0	[0..1]	[246..1]
Y1407_PSEU2 - Probable transcriptional regulatory protein Psyr_1407 OS=Pseudomonas syringae pv. syringae (strain B... tr\|F3G1F8\|F3G1F8... - Probable transcriptional regulatory protein PSYPI_00070 OS=Pseudomonas syringae pv. pisi str. 1704B ...	372.0	[0..1]	[246..1]
Y1763_HISS2 - Probable transcriptional regulatory protein HSM_1763 OS=Histophilus somni (strain 2336) GN=HSM_1763 ...	372.0	[0..1]	[246..1]
Y596_HAEDU - UPF0082 protein HD_0596 OS=Haemophilus ducreyi GN=HD_0596 PE=3 SV=1 Y596_HAEDU - Probable transcriptional regulatory protein HD_0596 OS=Haemophilus ducreyi (strain 35000HP / ATCC 70...	371.0	[0..1]	[246..1]
Y3775_PSE14 - Probable transcriptional regulatory protein PSPPH_3775 OS=Pseudomonas savastanoi pv. phaseolicola (s...	371.0	[0..1]	[246..1]
Y2326_GEODF - Probable transcriptional regulatory protein Geob_2326 OS=Geobacter daltonii (strain DSM 22248 / JCM ...	371.0	[0..1]	[246..1]
Y743_GEOMG - Probable transcriptional regulatory protein Gmet_0743 OS=Geobacter metallireducens (strain GS-15 / A...	371.0	[0..1]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGHSKWANI KHRKAAQDAQ RGKIFTKLIR ELVTAAKLGG GDVNANPRLR TAVDKALSSN  60
   61 MTRDTINRAI ERGVGGGDDT NMETKIYEGY GPGGTAVMVE CLSDNANRTI SQVRPSFTKC 120
  121 GGNLGTEGSV GYLFSKKGLI LITSGDEDVI MEAAIEAGAD DVQVQEDGSF EVYTAWEELG 180
  181 AVRDGIESAG IKIDNAEVTM IPSTTVELDA ETAPKLLKLI DMLEDCDDVQ NVYHNGEISD 240
  241 EIAAML

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.0
Match:	1konA
Description:	Hypothetical protein YebC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits