YRC Public Data Repository - Protein Structure Prediction

Protein:	Y598_BRUME
Organism:	Brucella melitensis
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y598_BRUME.

Description	E-value	Query Range	Subject Range
gi\|189024538, gi... - gi\|189024538\|ref\|YP_001935306.1\| hypothetical protein BAbS19_I13370 [Brucella abortus S19], gi\|18902... Y1459_BRUMB - UPF0303 protein BMEA_A1459 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=BMEA_A1459 PE=3 S... gi\|254694096 - gi\|254694096\|ref\|ZP_05155924.1\| hypothetical protein Babob3T_05419 [Brucella abortus bv. 3 str. Tuly... gi\|254697748 - gi\|254697748\|ref\|ZP_05159576.1\| hypothetical protein Babob28_08593 [Brucella abortus bv. 2 str. 86/8... gi\|237789109, gi... - gi\|237815811\|ref\|ZP_04594808.1\| Hypothetical protein, conserved [Brucella abortus str. 2308 A], gi\|2... gi\|254689606 - gi\|254689606\|ref\|ZP_05152860.1\| hypothetical protein Babob68_05424 [Brucella abortus bv. 6 str. 870] gi\|254710453 - gi\|254710453\|ref\|ZP_05172264.1\| hypothetical protein BpinB_09352 [Brucella pinnipedialis B2/94] gi\|254714446 - gi\|254714446\|ref\|ZP_05176257.1\| hypothetical protein BcetM6_14133 [Brucella ceti M644/93/1] gi\|254702133 - gi\|254702133\|ref\|ZP_05163961.1\| hypothetical protein Bsuib55_14914 [Brucella suis bv. 5 str. 513] gi\|254708083 - gi\|254708083\|ref\|ZP_05169911.1\| hypothetical protein BpinM_14302 [Brucella pinnipedialis M163/99/10] Y1430_BRUA2 - UPF0303 protein BAB1_1430 OS=Brucella abortus (strain 2308) GN=BAB1_1430 PE=3 SV=1 Y1406_BRUAB - UPF0303 protein BruAb1_1406 OS=Brucella abortus GN=BruAb1_1406 PE=3 SV=1 gi\|254717344 - gi\|254717344\|ref\|ZP_05179155.1\| hypothetical protein BcetM_13262 [Brucella ceti M13/05/1] Y1406_BRUAB - UPF0303 protein BruAb1_1406 OS=Brucella abortus biovar 1 (strain 9-941) GN=BruAb1_1406 PE=3 SV=1 gi\|254730637 - gi\|254730637\|ref\|ZP_05189215.1\| hypothetical protein Babob42_05449 [Brucella abortus bv. 4 str. 292]	239.0	[0..1]	[169..1]
Y1411_BRUSU, YE1... - (Q8FZR2) Hypothetical UPF0303 protein BR1411, UPF0303 protein BR1411 OS=Brucella suis GN=BR1411 PE=3... gi\|254704669 - gi\|254704669\|ref\|ZP_05166497.1\| hypothetical protein Bsuib36_12272 [Brucella suis bv. 3 str. 686] Y1462_BRUSI - UPF0303 protein BSUIS_A1462 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=BSUIS_A1462 PE=3 SV... Y1411_BRUSU - UPF0303 protein BR1411/BS1330_I1405 OS=Brucella suis biovar 1 (strain 1330) GN=BR1411 PE=3 SV=1 Y1444_BRUC2 - UPF0303 protein BCAN_A1444 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=BCAN_A1444 PE=3 SV=...	239.0	[0..1]	[169..1]
Y1932_BURXL - UPF0303 protein Bxeno_A1932 OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_A1932 PE=3 SV=1	237.0	[0..6]	[169..2]
gi\|254252488, gi... - gi\|84361653\|ref\|ZP_00986308.1\| COG4702: Uncharacterized conserved protein [Burkholderia dolosa AUO15...	236.0	[0..6]	[168..2]
gi\|67530726, gi\|... - gi\|67548007\|ref\|ZP_00425903.1\| Protein of unknown function DUF967 [Burkholderia vietnamiensis G4], g...	234.0	[0..6]	[169..20]
YT83_RHIME, Y298... - (P29953) Hypothetical UPF0303 protein R02983, UPF0303 protein R02983 OS=Rhizobium meliloti GN=R02983... Y2983_RHIME - UPF0303 protein R02983 OS=Rhizobium meliloti (strain 1021) GN=R02983 PE=3 SV=2	234.0	[0..6]	[166..2]
gi\|46916730, gi\|... - gi\|54303300\|ref\|YP_133293.1\| hypothetical protein PBPRB1633 [Photobacterium profundum SS9], gi\|46916...	234.0	[0..11]	[160..5]
gi\|152406 - gi\|152406\|gb\|AAA26355.1\| ORF1; putative [Sinorhizobium meliloti]	233.0	[0..6]	[166..2]
Y1459_BURCM - UPF0303 protein Bamb_1459 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_1459 PE=3 S...	232.0	[0..6]	[169..2]
Y1078_BURCA - UPF0303 protein Bcen_1078 OS=Burkholderia cenocepacia (strain AU 1054) GN=Bcen_1078 PE=3 SV=1 gi\|84357658, gi\|... - gi\|84357658\|ref\|ZP_00982471.1\| COG4702: Uncharacterized conserved protein [Burkholderia cenocepacia ... Y1558_BURCH - UPF0303 protein Bcen2424_1558 OS=Burkholderia cenocepacia (strain HI2424) GN=Bcen2424_1558 PE=3 SV=1 Y1534_BURCC - UPF0303 protein Bcenmc03_1534 OS=Burkholderia cenocepacia (strain MC0-3) GN=Bcenmc03_1534 PE=3 SV=1	231.0	[0..6]	[169..2]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQGDDNKQA IGQIIRQEQA LIFPSLDEND AFSLGQRIRD IAVKDKLGIA IDISLWGRRL  60
   61 FFAATAGATA DNTEWLRRKF NVVRRFHVST YRLVLEQNRE DRMFAPYKAL DVADYALAGG 120
  121 GFPIRVSGAG VIGAVIVSGL PQREDHNLVV RAVAEHVGQD PVALALPAA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	6.19
Match:	2a2lA
Description:	Crystal structure of Klebsiella pneumoniae hypothetical protein ORFY, New York Structural Genomics Consortium
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits