YRC Public Data Repository - Protein Structure Prediction

Protein:	Y005_SYNY3
Organism:	Synechocystis sp. PCC 6803
Length:	681 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y005_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|25534796 - pir\|\|AH2425 hypothetical protein all4960 [imported] - Nostoc sp. (strain PCC 7120) gi\|17134098, gi\|... - gi\|17232452\|ref\|NP_489000.1\| hypothetical protein all4960 [Nostoc sp. PCC 7120], gi\|17134098\|dbj\|BAB...	489.0	[0..1]	[672..5]
gi\|75702177, gi\|... - gi\|75908452\|ref\|YP_322748.1\| hypothetical protein Ava_2235 [Anabaena variabilis ATCC 29413], gi\|7570...	485.0	[0..1]	[672..1]
gi\|67855521, gi\|... - gi\|67922593\|ref\|ZP_00516099.1\| ABC-1 [Crocosphaera watsonii WH 8501], gi\|67855521\|gb\|EAM50774.1\| ABC...	481.0	[0..11]	[670..4]
gi\|22294673, gi\|... - gi\|22298493\|ref\|NP_681740.1\| hypothetical protein tll0950 [Thermosynechococcus elongatus BP-1], gi\|2...	454.0	[0..10]	[676..2]
gi\|71675663, gi\|... - gi\|71675663\|ref\|ZP_00673407.1\| ABC-1 [Trichodesmium erythraeum IMS101], gi\|71671131\|gb\|EAO27797.1\| A...	451.0	[0..42]	[670..47]
Y1796_ARATH - Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Arabidopsis thalia...	433.0	[0..37]	[673..80]
gi\|56752324, gi\|... - gi\|56752324\|ref\|YP_173025.1\| hypothetical protein syc2315_d [Synechococcus elongatus PCC 6301], gi\|5...	430.0	[0..48]	[663..17]
gi\|46130086, gi\|... - gi\|81300587\|ref\|YP_400795.1\| hypothetical protein Synpcc7942_1778 [Synechococcus elongatus PCC 7942]...	430.0	[0..48]	[663..14]
gi\|33862270, gi\|... - gi\|33862270\|ref\|NP_893831.1\| hypothetical protein PMM1714 [Prochlorococcus marinus subsp. pastoris s...	402.0	[0..46]	[661..10]

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Predicted Domain #1

Region A:
Residues: [1-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPAPMPVTT AEQDRDVVVI DAVVEEVRPP RLPKSHLEDL GPVSDMFPES WEYHPDLIME  60
   61 FYRKRPLQVL GRLINILFPL LRFILGIWWE KLRGKDPTVS RAKAIQLREL LTNLGPTYIK 120
  121 VGQALSTRPD LVPPVFLDEL TTLQDQLPSF PNEVAYRFIE EELGAPAEEI YAELSPEPIA 180
  181 AASLGQVYKG KLKTGEAVAV KVQRPDLVRR ITLDIYIMRS LSLWARRSVK RLRSDLVAIT 240
  241 DELASRVFEE MNYYQEAING EKFAQLYGSL PEIYVPSIYW QYTGRRVLTM EWVEGIKLTN 300
  301 IKAIQAQGID ATHLVEVGVQ CSLRQLLEHG FFHADPHPGN LLAMADGRLA YLDFGMMSTI 360
  361 QPYQRYGLIE AVVHLVNRDF DSLAKDYVKL DFLKPDTDLK PIIPALGQVF GNALGASVAE 420
  421 LNFKSITDQM SAMMYEFPFR VPAYYALIIR SMVTLEGIAI GIDPNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.522879
Match:	2fo0A
Description:	No description for 2fo0A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.58699080719302	bayes_pls_golite062009
transferase activity	1.29717608790759	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.21088492986025	bayes_pls_golite062009
kinase activity	1.16854637967869	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	1.10694163833843	bayes_pls_golite062009
protein kinase activity	1.05289537088768	bayes_pls_golite062009
protein serine/threonine kinase activity	0.481959842887182	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [467-537]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVLSKAYPYI AKRLLTDQSE ELRTSLKELL FKEGSFRWNR LENLLRNAKN SPGFDFDYVL  60
   61 NEATEFLLSD R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	1omwA
Description:	G-protein coupled receptor kinase 2, N-terminal domain; G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1); G-protein coupled receptor kinase 2
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [538-681]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQFIRDRLVA ELVNSIDQLG RNTWQQVSHN IQERISFLGD LGNGNGKAHQ TKTIKVVPQP  60
   61 AIAQQEETWQ HLQNLWQILK ETPGFDPLKF VPVLSQIIVN PTSRRMGQQV AEGLLQKAIA 120
  121 RVIRQWALAL ESQPNPAIKI RNAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.39794
Match:	2aaoA
Description:	Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: