YRC Public Data Repository - Protein Structure Prediction

Protein:	XDHC_ECOLI
Organism:	Escherichia coli
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XDHC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15621562, gi\|... - gi\|15920779\|ref\|NP_376448.1\| dehydrogenase [Sulfolobus tokodaii str. 7], gi\|15621562\|dbj\|BAB65557.1\|...	186.0	[0..1]	[157..7]
gi\|62484833 - gi\|62484833\|emb\|CAI78850.1\| 4-hydroxybenzoyl-CoA reductase alpha/gamma subunit (hcrC/hcrA) [uncultur...	179.0	[0..6]	[159..1]
gi\|70606703, gi\|... - gi\|70606703\|ref\|YP_255573.1\| carbon monoxide dehydrogenase small chain [Sulfolobus acidocaldarius DS...	179.0	[0..1]	[158..4]
gi\|13815736, gi\|... - gi\|15899181\|ref\|NP_343786.1\| carbon monoxide dehydrogenase, small chain (cutC-1) [Sulfolobus solfata... gi\|25316890 - pir\|\|A99415 hypothetical protein cutC-1 [imported] - Sulfolobus solfataricus	178.0	[0..4]	[157..10]
gi\|90306510, gi\|... - gi\|90306510\|gb\|EAS36141.1\| hypothetical protein CIMG_01495 [Coccidioides immitis RS], gi\|119194241\|r...	177.0	[0..7]	[159..29]
gi\|48862172, gi\|... - gi\|90022496\|ref\|YP_528323.1\| putative oxidoreductase [Saccharophagus degradans 2-40], gi\|89952096\|gb...	176.0	[0..8]	[156..1]
gi\|116199841, gi... - gi\|88179355\|gb\|EAQ86823.1\| hypothetical protein CHGG_08076 [Chaetomium globosum CBS 148.51], gi\|1161...	176.0	[0..7]	[159..24]
gi\|120553837, gi... - gi\|77952825\|ref\|ZP_00817238.1\| putative aldehyde dehydrogenase subunit III [Marinobacter aquaeolei V...	175.0	[0..7]	[158..1]
gi\|70993720, gi\|... - gi\|70993720\|ref\|XP_751707.1\| xanthine dehydrogenase HxA [Aspergillus fumigatus Af293], gi\|66849341\|g...	175.0	[0..7]	[158..30]
gi\|83768055 - gi\|83768055\|dbj\|BAE58194.1\| unnamed protein product [Aspergillus oryzae] gi\|169771453 - gi\|169771453\|ref\|XP_001820196.1\| hypothetical protein [Aspergillus oryzae RIB40]	174.0	[0..7]	[155..30]

Back

Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHSETITIE CTINGMPFQL HAAPGTPLSE LLREQGLLSV KQGCCVGECG ACTVLVDGTA  60
   61 IDSCLYLAAW AEGKEIRTLE GEAKGGKLSH VQQAYAKSGA VQCGFCTPGL IMATTAMLAK 120
  121 PREKPLTITE IRRGLAGNLC RCTGYQMIVN TVLDCEKTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.154902
Match:	1ffuA
Description:	Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain; Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
electron carrier activity	1.8452767229444	bayes_pls_golite062009
oxidoreductase activity	1.29798120961328	bayes_pls_golite062009
catalytic activity	0.475559813757564	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: