YRC Public Data Repository - Protein Structure Prediction

Protein:	VISC_ECOLI
Organism:	Escherichia coli
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VISC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75227224, gi\|... - gi\|75227224\|ref\|ZP_00714024.1\| COG0654: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dep...	267.0	[0..1]	[400..1]
gi\|73856941, gi\|... - gi\|74313464\|ref\|YP_311883.1\| hypothetical protein SSON_3059 [Shigella sonnei Ss046], gi\|73856941\|gb\|... gi\|254289578, gi... - gi\|254289578\|ref\|YP_003055326.1\| hypothetical protein ECD_02738 [Escherichia coli BL21(DE3)], gi\|253... gi\|194415659, gi... - gi\|75212479\|ref\|ZP_00712503.1\| COG0654: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dep... gi\|251786164, gi... - gi\|251786164\|ref\|YP_003000468.1\| hypothetical protein B21_02701 [Escherichia coli BL21], gi\|24237843... gi\|157079195, gi... - gi\|75187622\|ref\|ZP_00700889.1\| COG0654: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dep... gi\|253974719, gi... - gi\|254162818\|ref\|YP_003045926.1\| hypothetical protein ECB_02738 [Escherichia coli B str. REL606], gi... gi\|218362222, gi... - gi\|218555454\|ref\|YP_002388367.1\| hypothetical protein ECIAI1_3025 [Escherichia coli IAI1], gi\|218362... gi\|218696502, gi... - gi\|218696502\|ref\|YP_002404169.1\| hypothetical protein EC55989_3194 [Escherichia coli 55989], gi\|2183... gi\|188487339, gi... - gi\|188492140\|ref\|ZP_02999410.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Esc...	266.0	[0..1]	[400..1]
gi\|110616356, gi... - gi\|110806808\|ref\|YP_690328.1\| hypothetical protein SFV_2954 [Shigella flexneri 5 str. 8401], gi\|1106...	266.0	[0..1]	[400..1]
gi\|191173241, gi... - gi\|75239249\|ref\|ZP_00723222.1\| COG0654: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dep... gi\|110643054, gi... - gi\|110643054\|ref\|YP_670784.1\| hypothetical protein ECP_2899 [Escherichia coli 536], gi\|110344646\|gb\|...	265.0	[0..1]	[400..1]
gi\|189377677, gi... - gi\|189377677\|gb\|EDU96093.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Escheri... gi\|195936524 - gi\|195936524\|ref\|ZP_03081906.1\| hypothetical protein EscherichcoliO157_08682 [Escherichia coli O157:... gi\|208805611, gi... - gi\|208805611\|ref\|ZP_03247948.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Esc... gi\|15833031, gi\|... - gi\|15833031\|ref\|NP_311804.1\| hypothetical protein ECs3777 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208735692, gi... - gi\|208814415\|ref\|ZP_03255744.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Esc... gi\|168766902, gi... - gi\|189363645\|gb\|EDU82064.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Escheri... gi\|168775786, gi... - gi\|187768774\|gb\|EDU32618.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Escheri... gi\|189003458, gi... - gi\|189003458\|gb\|EDU72444.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Escheri... gi\|189374039, gi... - gi\|189374039\|gb\|EDU92455.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Escheri... gi\|209760470, gi... - pir\|\|E85946 hypothetical protein visC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|168747612, gi... - gi\|188017922\|gb\|EDU56044.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Escheri... gi\|12517436, gi\|... - gi\|15803441\|ref\|NP_289474.1\| hypothetical protein Z4243 [Escherichia coli O157:H7 EDL933], gi\|125174... gi\|189358665, gi... - gi\|189358665\|gb\|EDU77084.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Escheri... gi\|15833031, gi\|... - gi\|15833031\|ref\|NP_311804.1\| hypothetical protein ECs3777 [Escherichia coli O157:H7], gi\|13363249\|db... gi\|189369394, gi... - gi\|189369394\|gb\|EDU87810.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Escheri... gi\|208740853, gi... - gi\|208820730\|ref\|ZP_03261050.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Esc... gi\|209397458, gi... - gi\|209397458\|ref\|YP_002272382.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Es... gi\|217327872, gi... - gi\|217327872\|ref\|ZP_03443955.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family [Esc... gi\|254794855, gi... - gi\|254794855\|ref\|YP_003079692.1\| predicted oxidoreductase with FAD/NAD(P)-binding domain [Escherichi...	265.0	[0..1]	[400..1]
gi\|30042474, gi\|... - gi\|30064217\|ref\|NP_838388.1\| hypothetical protein S3091 [Shigella flexneri 2a str. 2457T], gi\|300424...	265.0	[0..1]	[400..1]
gi\|187430411, gi... - gi\|75178799\|ref\|ZP_00698835.1\| COG0654: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dep...	265.0	[0..1]	[400..1]
gi\|24053300, gi\|... - gi\|24114159\|ref\|NP_708669.1\| hypothetical protein SF2892 [Shigella flexneri 2a str. 301], gi\|2405330...	265.0	[0..1]	[400..1]
gi\|106760746, gi... - gi\|119944382\|ref\|YP_942062.1\| ubiquinone biosynthesis visC protein [Psychromonas ingrahamii 37], gi\|...	265.0	[0..1]	[400..2]
gi\|227834725, gi... - gi\|227888456\|ref\|ZP_04006261.1\| FAD-dependent monooxygenase [Escherichia coli 83972], gi\|227834725\|g... gi\|26249323, gi\|... - gi\|26249323\|ref\|NP_755363.1\| hypothetical protein c3488 [Escherichia coli CFT073], gi\|26109731\|gb\|AA...	265.0	[0..1]	[400..1]

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Predicted Domain #1

Region A:
Residues: [1-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSVDVAIVG GGMVGLAVAC GLQGSGLRVA VLEQRVQEPL AANAPPQLRV SAINAASEKL  60
   61 LTRLGVWQDI LSRRASCYHG MEVWDKDSFG HISFDDQSMG YSHLGHIVEN SVIHYALWNK 120
  121 AHQSSDITLL APAELQQVAW GENETFLTLK DGSMLTARLV IGADGANSWL RNKADIPLTF 180
  181 WDYQHHALVA TIRTEEPHDA VARQVFHGEG ILAFLPLSDP HLCSIVWSLS PEEAQRMQQA 240
  241 SEDEFNRALN IAFDNRLGLC KVESARQVFP LTGRYARQFA SHRLALVGDA AHTIHPLAGQ 300
  301 GVNLGFMDAA ELIAELKRLH RQGKDIGQYI YLRRYERSRK HSAALMLAGM QGFRDLFSGT 360
  361 NPAKKLLRDI GLKLADTLPG VKPQLIRQAM GLNDLPEWLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.221849
Match:	2qa2A
Description:	No description for 2qa2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits