| Protein: | retr-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 517 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for retr-1.
| Description | E-value | Query Range |
Subject Range |
|
|
554.0 | [0..162] | [517..1817] |
|
|
191.0 | [0..6] | [276..88] |
|
|
188.0 | [0..6] | [261..88] |
|
|
187.0 | [0..6] | [308..88] |
|
|
187.0 | [0..6] | [261..88] |
|
|
187.0 | [0..6] | [261..88] |
|
|
187.0 | [0..6] | [261..88] |
|
|
187.0 | [0..6] | [306..88] |
|
Region A: Residues: [1-195] |
1 11 21 31 41 51
| | | | | |
1 MEVNEGQDTE GGSSRAQTLT PPPNPQQQLY DEEDLLRESM DTTEKTFENG FQIQKEQIRQ 60
61 HLQDSSQRGT AEDAETQKMK QFLDTNELHN MASDSWAMMR EEIMEKRETN RDLNRQLKEK 120
121 SEELMQKSQI LVETTLKLKA VEEERDKRKK EEQFREADAR SNNYARKDHG YKMHNIELKN 180
181 EYTSTTYRCR YICRC
|
| Detection Method: |  |
| Confidence: | 20.0 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [196-296] |
1 11 21 31 41 51
| | | | | |
1 ALKPCMFNMT LVPEAHTPSP TQLYRMYCIM EKSGNRKIDP KQLMAMSSRP LPSPLQITLP 60
61 DKMMDNLFKD MIGCSSLWTY VAELGWENSY NRYVDKLLNE N
|
| Detection Method: | |
| Confidence: | 6.045757 |
| Match: | 2repA |
| Description: | No description for 2repA was found. |
|
Region A: Residues: [297-517] |
1 11 21 31 41 51
| | | | | |
1 CGDILNGPGT MLILADGLRL EDLPVSTKNC FVCTDYDEET LIALQKKCCR ERFKMIVLVI 60
61 PFTIDVELVD CWNRLIAKIS EETKILVVSN MTPDELEDHA LLVEFTSILQ KCRRVDDGYL 120
121 EIISLHDRLE AHPRKTLEMT ALAGKVEYWK AVQTRAKEVG MEWKAFELKR CTSDTPVKNS 180
181 DCEASTSMKS ASTVRTFEDR MVKRGNHNRV YHHFTPYGRK K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
