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View Structure Prediction Details

Protein: CE41386
Organism: Caenorhabditis elegans
Length: 787 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CE41386.

Predicted Domain #1
Region A:
Residues: [1-659]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITRVSLLRL QHARKVLTTT ASTSSKPSTL TIGSVSVQLQ DAKNPDFVPA FYGQKNNPPQ  60
   61 DLLPHLRWLI QKDKLKQDVF LLGVPGKIRL ELVLRYLEAT NREFEYLPIT RDTTEADIKQ 120
  121 RREIRDGTAY YTDLCAVRAA LKGRVLVIDG VERAERNVLP ILNNLLENRE MQLDDGRFLM 180
  181 KHDKYDELKV KYDEATLKKM GMERVSENFH VIALGLPVPR FPGNSLDPPF RSRFQCRNIQ 240
  241 ELSFHTFLEQ AKLIAPNVSE TNLNDLISVV YAYNSEASTS RPRIGTAVVE NTLKIWNENP 300
  301 SYSAGEIVNF SYPAKEVLSD SEKDLINTFK TKFELSTHER TRELKTDGAL HTVQVPADKR 360
  361 KIQMKLPTPS HPTSFASTWI PTAKQENLIA DLALAFSKGD FILIGPKGSG KSRILGELSR 420
  421 RLNFNYVTMV LHQDMNTREL IQRRHMKENG DTVWEDSILV TAARNGDVCV LDGVEMVHSS 480
  481 VIMSLSQLIY HRRFDLPNGN RLVGEKEFLT IMERDGYDAD AYEKVWNKVQ APSRKLASVI 540
  541 DQLEAKKKER EWTKHQTSGD LDDGKLIEGV TGEQNIYRRR IDKVPDPGAP QTKPKRLKVC 600
  601 LDVSGSMYRF NGYDQRLVKS LEAALMTMTA LDGKTDKVQY DIIGHSGDSP CVSFVKTDH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.69897
Match: 1ksfX
Description: N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone; ClpA, an Hsp100 chaperone, AAA+ modules
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [660-787]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPKNNKERLD TLKRMIAHTQ YCVSGDNTVE SLQFAIKELA AKKDDFDETV VILVSDANLE  60
   61 RYGIQPKELK DAMAKEPNIN SFVIFIGSLS DEADQLQREL PVGKAFVLKD TSELPKIMET 120
  121 IFSSTIAQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.0
Match: 1hqcA
Description: Holliday junction helicase RuvB
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle